General information for g3750.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as MOB kinase activator-like 1.
Parent gene
- The parent gene g3750 is located on chr_3: 27811194..27812541 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3750 | g3750.t3 | isoform | g3750.t3 | 27810264 | 27811905 |
| chr_3 | g3750 | g3750.t3 | exon | g3750.t3.exon1 | 27810264 | 27811660 |
| chr_3 | g3750 | g3750.t3 | TTS | g3750.t3 | 27810267 | 27810267 |
| chr_3 | g3750 | g3750.t3 | cds | g3750.t3.CDS1 | 27811194 | 27811660 |
| chr_3 | g3750 | g3750.t3 | exon | g3750.t3.exon2 | 27811742 | 27811905 |
| chr_3 | g3750 | g3750.t3 | cds | g3750.t3.CDS2 | 27811742 | 27811838 |
| chr_3 | g3750 | g3750.t3 | TSS | g3750.t3 | 27812418 | 27812418 |
Sequences
>g3750.t3 Gene=g3750 Length=1561
TAATCGATCGAATAAAACGTTCAAGCCTAAGAAAAATATACCAGAAGGTACACATCAGTA
TGATTTAATGAAGCATGCGGCTGCAACATTGGGCTCAGGAAATTTGAGAAATGCTGTTCA
ACTGCCAGAAGGTGAAGATGTAAATGAGTGGATTGCTGTTAACACTGTAGACTTTTTCAA
TCAAATAAACATGTTATACGGAACAATAACAGAATTCTGTACAGAGGACACATGTTGCAT
TATGTCAGCAGGACCAAAATATGAATATCACTGGGCAGATGGACAAACAGTTAAAAAACC
AATCAAATGTAGTGCACCAAAGTATATTGATTATTTAATGACATGGGTTCAGGACCAGCT
TGATGATGAGACACTCTTCCCATCAAAAATTGGCGTACCTTTTCCCAAAAACTTCCAAAC
AATAGCAAAAACTATTCTTAAACGACTCTTCCGCGTCTATGCTCACATTTATCATCAGCA
TTTTCCCGAAGTCGTGAGATTGGGCGAGGAAGCACATCTAAACACATCATTTAAGCATTT
TATATTTTTCGTTCAAGAATTTCAATTAATCGATCGCCGTGAATTGGCACCTTTGCAGGA
GTTGATCGATAAATTGACGGCAAAAGGTTAGGAGCAAATGGACATTAATTTAAATAATCG
TATATAACGCATAATTTAGATTTCTTTTAACAAATCTGTGCTTTTGACACTTCTTCAATT
TTATTTAAAAATTTAAAACTTTTTTTGTTTTCTTCTTTGATTAAAATTGTGATAGAAAAT
CAAAAAGAAAAATTTAATGAGCAGATCAGACGTTTGTAAAGTACGAAATCTTCATAAATA
GTACTATTATATCTTATTATTATTATAATTATTTTACTTTAGTCTTCATTCTCCTGCCAT
TGTCAAATGAATTTTTATGCGTAAGCTTGAATCAAATTTCTTCTTTCTTCTTCGAAATAC
TATAAAATATTTCGGCTTCAGATTTTTTTTTGATTTTAAAAAATTTGAAATTAGGTCCAA
ATCGAGCTTAGAAAAATAAGGTTTTATTTAAAAATGATTCGCAGGTCAAAATTAAAAATT
ATATCATAGTTCTCTAAAAAATATTATTTTCCTACAAAATCAATTGTAAATAATATGAAA
TTACGAATTTCATTGTAAAAAATCACAAACATACATATATACACACATATTCTATAACTA
TAATCCTTTTTCTCATTGAATTCATTATTTATTTCATACAAATATTTCTGATTGTGAACG
CAAATTGTTCGAATTTCGCTTGCTGCAATGAAAAACCGCTTTTAGCGTTCTAAAATGATG
TTTTAAGAGAAAAATAACATGACTGAATATGATAGAAAAAGATTTCAAACAAGAAATTTA
TTACAGGCTGAATAGTGGAACGATAATAAAAAAATCTGATTATAAAATATTCAATTATCT
CGAACAATTTCGTTACGAAAATAAAGTTTGCATTGTTTTAGTTAAACAACTCATTGATAA
GTATACATAAAACATGATAATAAAGTGAAATAAAAATATTTTTAATAAATTTTGAAATAA
A
>g3750.t3 Gene=g3750 Length=187
MKHAAATLGSGNLRNAVQLPEGEDVNEWIAVNTVDFFNQINMLYGTITEFCTEDTCCIMS
AGPKYEYHWADGQTVKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFQTIA
KTILKRLFRVYAHIYHQHFPEVVRLGEEAHLNTSFKHFIFFVQEFQLIDRRELAPLQELI
DKLTAKG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g3750.t3 | Gene3D | G3DSA:1.20.140.30 | Mob1/phocein | 1 | 187 | 0 |
| 2 | g3750.t3 | PANTHER | PTHR22599 | MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB | 1 | 186 | 0 |
| 3 | g3750.t3 | PANTHER | PTHR22599:SF30 | MOB KINASE ACTIVATOR 1A | 1 | 186 | 0 |
| 1 | g3750.t3 | Pfam | PF03637 | Mob1/phocein family | 6 | 176 | 0 |
| 5 | g3750.t3 | SMART | SM01388 | Mob1_phocein_2 | 3 | 176 | 0 |
| 4 | g3750.t3 | SUPERFAMILY | SSF101152 | Mob1/phocein | 2 | 184 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K06685 (MOB kinase activator 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
