General information for g3750.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as MOB kinase activator-like 1.
Parent gene
- The parent gene g3750 is located on chr_3: 27811194..27812541 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3750 | g3750.t6 | TTS | g3750.t6 | 27810267 | 27810267 |
| chr_3 | g3750 | g3750.t6 | isoform | g3750.t6 | 27811194 | 27812276 |
| chr_3 | g3750 | g3750.t6 | exon | g3750.t6.exon1 | 27811194 | 27811654 |
| chr_3 | g3750 | g3750.t6 | cds | g3750.t6.CDS1 | 27811194 | 27811654 |
| chr_3 | g3750 | g3750.t6 | exon | g3750.t6.exon2 | 27811742 | 27811905 |
| chr_3 | g3750 | g3750.t6 | cds | g3750.t6.CDS2 | 27811742 | 27811905 |
| chr_3 | g3750 | g3750.t6 | exon | g3750.t6.exon3 | 27812263 | 27812276 |
| chr_3 | g3750 | g3750.t6 | cds | g3750.t6.CDS3 | 27812263 | 27812276 |
| chr_3 | g3750 | g3750.t6 | TSS | g3750.t6 | 27812418 | 27812418 |
Sequences
>g3750.t6 Gene=g3750 Length=639
ATGTCTTTTCTATTTAATCGATCGAATAAAACGTTCAAGCCTAAGAAAAATATACCAGAA
GGTACACATCAGTATGATTTAATGAAGCATGCGGCTGCAACATTGGGCTCAGGAAATTTG
AGAAATGCTGTTCAACTGCCAGAAGGTGAAGATGTAAATGAGTGGATTGCTGTTAACAAC
TTTTTCAATCAAATAAACATGTTATACGGAACAATAACAGAATTCTGTACAGAGGACACA
TGTTGCATTATGTCAGCAGGACCAAAATATGAATATCACTGGGCAGATGGACAAACAGTT
AAAAAACCAATCAAATGTAGTGCACCAAAGTATATTGATTATTTAATGACATGGGTTCAG
GACCAGCTTGATGATGAGACACTCTTCCCATCAAAAATTGGCGTACCTTTTCCCAAAAAC
TTCCAAACAATAGCAAAAACTATTCTTAAACGACTCTTCCGCGTCTATGCTCACATTTAT
CATCAGCATTTTCCCGAAGTCGTGAGATTGGGCGAGGAAGCACATCTAAACACATCATTT
AAGCATTTTATATTTTTCGTTCAAGAATTTCAATTAATCGATCGCCGTGAATTGGCACCT
TTGCAGGAGTTGATCGATAAATTGACGGCAAAAGGTTAG
>g3750.t6 Gene=g3750 Length=212
MSFLFNRSNKTFKPKKNIPEGTHQYDLMKHAAATLGSGNLRNAVQLPEGEDVNEWIAVNN
FFNQINMLYGTITEFCTEDTCCIMSAGPKYEYHWADGQTVKKPIKCSAPKYIDYLMTWVQ
DQLDDETLFPSKIGVPFPKNFQTIAKTILKRLFRVYAHIYHQHFPEVVRLGEEAHLNTSF
KHFIFFVQEFQLIDRRELAPLQELIDKLTAKG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g3750.t6 | Gene3D | G3DSA:1.20.140.30 | Mob1/phocein | 1 | 212 | 0 |
| 2 | g3750.t6 | PANTHER | PTHR22599 | MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB | 3 | 211 | 0 |
| 3 | g3750.t6 | PANTHER | PTHR22599:SF30 | MOB KINASE ACTIVATOR 1A | 3 | 211 | 0 |
| 1 | g3750.t6 | Pfam | PF03637 | Mob1/phocein family | 33 | 201 | 0 |
| 5 | g3750.t6 | SMART | SM01388 | Mob1_phocein_2 | 30 | 201 | 0 |
| 4 | g3750.t6 | SUPERFAMILY | SSF101152 | Mob1/phocein | 14 | 209 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K06685 (MOB kinase activator 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
