Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Transcription factor btd.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3758 g3758.t1 isoform g3758.t1 27855509 27856129
chr_3 g3758 g3758.t1 exon g3758.t1.exon1 27855509 27856129
chr_3 g3758 g3758.t1 cds g3758.t1.CDS1 27855509 27856129
chr_3 g3758 g3758.t1 TSS g3758.t1 NA NA
chr_3 g3758 g3758.t1 TTS g3758.t1 NA NA

Sequences

>g3758.t1 Gene=g3758 Length=621
ATGGCAACAATTAAAGTTTCTCAACCACCTCAAACATATTCGCGAACGATTTTTCGACCA
TGGGATACAGTGAAAGAGGAAAAAAGTGAAATAAAAGTGCCAGAATGTAGTTCACAAAGT
TTACAACAAGCTGAAGTCTTAAGTAGATCAATTTTTATGCCAACAATGCCTGAATATTTG
TATATGCCGCCAACACCACCTGCTGATTTTCTCCCAATTGATGCTTACTCGTTAAGCTTT
ATGGAGCAAGAATATATGCGAGTGATGGCTGAAGAAGCTCGTGCAAAAATGATGAGCACA
AAAAAACAAAGACCGAAAAAATTCAAATGTCCACATTGCGATGTCGCAAAATTCTCGAAT
AATGGTCAATTGAAATCTCACATTCGAACACATACTGGCGAGAGGCCATTCAAATGTGAA
ACGTGCGAGAAAACTTTCACAAGAAATGAAGAATTGACTAGACATAAGCGAATTCATTCT
GGAATCCGTCCGTTCGCTTGTCCGACGTGCCAGAAAAAATTCGGAAGAAGAGACCATTTA
AAGAAACATCAAAGAACTCACGCTTCGGCTGAAAGATATAGCACACTTTTACTGCCTGTT
TATGGATATTACGGTTATTAG

>g3758.t1 Gene=g3758 Length=206
MATIKVSQPPQTYSRTIFRPWDTVKEEKSEIKVPECSSQSLQQAEVLSRSIFMPTMPEYL
YMPPTPPADFLPIDAYSLSFMEQEYMRVMAEEARAKMMSTKKQRPKKFKCPHCDVAKFSN
NGQLKSHIRTHTGERPFKCETCEKTFTRNEELTRHKRIHSGIRPFACPTCQKKFGRRDHL
KKHQRTHASAERYSTLLLPVYGYYGY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g3758.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 106 136 1.1E-11
13 g3758.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 137 159 4.9E-14
12 g3758.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 160 189 2.6E-10
4 g3758.t1 PANTHER PTHR24409:SF357 HUCKEBEIN 70 200 7.3E-65
5 g3758.t1 PANTHER PTHR24409 ZINC FINGER PROTEIN 142 70 200 7.3E-65
1 g3758.t1 Pfam PF00096 Zinc finger, C2H2 type 108 131 4.7E-5
2 g3758.t1 Pfam PF00096 Zinc finger, C2H2 type 137 159 5.8E-6
3 g3758.t1 Pfam PF00096 Zinc finger, C2H2 type 165 187 2.3E-5
10 g3758.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 139 159 -
11 g3758.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 167 187 -
16 g3758.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 108 136 11.302
17 g3758.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 137 164 15.999
15 g3758.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 165 192 12.986
7 g3758.t1 SMART SM00355 c2h2final6 108 131 0.0035
8 g3758.t1 SMART SM00355 c2h2final6 137 159 9.5E-4
9 g3758.t1 SMART SM00355 c2h2final6 165 187 7.6E-4
6 g3758.t1 SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers 118 174 3.03E-20

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed