General information for g3762.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Nuclear factor interleukin-3-regulated protein.
Parent gene
- The parent gene g3762 is located on chr_3: 27871857..27878522 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3762 | g3762.t1 | isoform | g3762.t1 | 27869949 | 27871973 |
| chr_3 | g3762 | g3762.t1 | exon | g3762.t1.exon1 | 27869949 | 27871747 |
| chr_3 | g3762 | g3762.t1 | cds | g3762.t1.CDS1 | 27869949 | 27871747 |
| chr_3 | g3762 | g3762.t1 | exon | g3762.t1.exon2 | 27871856 | 27871973 |
| chr_3 | g3762 | g3762.t1 | cds | g3762.t1.CDS2 | 27871856 | 27871973 |
| chr_3 | g3762 | g3762.t1 | TSS | g3762.t1 | 27872495 | 27872495 |
| chr_3 | g3762 | g3762.t1 | TTS | g3762.t1 | NA | NA |
Sequences
>g3762.t1 Gene=g3762 Length=1917
ATGGTGACTGAGCTTCAACACCATCAAGAAAGTGGAGCATCCATAATTATCGGTGGAGGA
GCCATAAAGCGAACTATCGATTCAAATTCATTAATCAATTCGTGTCATTATAAAAACGAC
ACTCAAACTGTCTTAATGCTAAGATCATCATCAATGAGTCCGACAATGATGAGTCCAACA
GGAGAGACCATGGGAGATGATGTTGGATCACCAGGTTCAAATTACGAAATGTCACAACAA
ATGAAACGTAAAGATATTTTTACACAACGTAAACAACGCGAATTTATCCCAGATGCAAAG
AAAGACGACAGCTATTGGGATAGACGTCGTCGTAATAATGAAGCAGCAAAACGATCAAGA
GAAAAGCGAAGATTCAATGATATGGTGCTTGAACAACGAGTAATTGAACTGACTAAAGAA
AATCATGTATTAAAAGCACAACTTGATGCGATTAAAGACAAATATAACATAAGTGGTGAA
AATTTAGTTAGTGTCGATCAAATTTTAGCCACATTGCCTACAAGTGAGCAAGTTTTGAGT
CTTACAAAGCGATTGAAGCCCAATTCAGTACATTCAAATGGCACAAATGATGAAGATGAA
CATTATGCACCACGTTTAGTGACACCAAAACCAACAGTGAATTATACCCAAGCACCAGCA
CAGCGTGAACATCAAATTCATCCAATTGATAGTTCACAGCCACCACAAATTATCTATGGC
AGTCGACAGAGTCAAAATAGTCCATTTGTAGCACATGCTGCTGAAGAACAACAGCAACAA
TTACCAACACCACAGCCTCAAATTATTCGTGTATCGCCAGCCTCACAGCCACAGCATTTA
CAAGCATCACAACAACAGCAGCAACAGCCAGTTCCTTCAACGCCAGTTATCACTTCATTA
TTCAAGCCATTGCACCCAACAAATGTACAACATCAACAACAACAATCTTCACCTCAACAA
CCACATCATCAACCTCATGATCTACATAAATTCATTTTGCTAAATAAAAATGGCGAATCA
CTGAATAATAATAATAATAATGATAAGAAACAATCATCAAATGGTGTCGCTGTGATTAGC
AATGAAAAGATGATCATTGTAAATGACGAGAAAGCGCCACGCGAAAGCGTTTTTCCTCAT
ATTCAACTTACAAAGTTCCTCACAAATACGGTCAAGTCGAATTACATTTCACATCACACA
TTTAGTCATCATCTTCATCATCATCATCATCATCCAGCTCATCATGAATTGGAAACAAGC
AGTGTATTGAATTTGTCGAGAAGAACAATTAGTAATGGCAGTGGCAGTGATATTGGAAAT
GATAATGAAGTTGAACATTTTGGAACGAATGAGTATTATAATGAATTTGCTAATAATGGC
GGTGGCAGTAATGGCAACCAGAGCGATAGAAGTAGTACAGTTGATGATGGTGAACATGAT
CATGATATGGAACATACATCAAATGGCAGCACAGTCAGTAATGTGTCAATGGATCATGCT
AGTTTACCACTTAAATTACGACACAAAACGCATTTCTTGGGTGAAAAAGAATCAGCAGCA
ACTGCACTTCTTGCACTTCACAATATCAAGCAAGAACCAACACCAACTTCACACTCACAT
TCGCCTGTTTGGGATGGTGAAAATTCATCAGATGAAAGAGATTCAGGGATTAGTATTGAA
CATCGTGATGTAAATCCGTCCGAATGGTCGAATATTCAAAGGAAAATTATCGTCAATGCA
AGCACAACGCCTGAGAATTTTGAACAGTTTAACACGCTCATTGTGAGCGAACCAAATGGA
AATGATAGAAATATTCATTTAAAGTCACATCTTGCTAGATTAGAGTCAGAAATCTCAACC
ATCAAGAATATGATGATTCTGAGTTCAAATAGCAACAGTGCACCAATTAATGCATAA
>g3762.t1 Gene=g3762 Length=638
MVTELQHHQESGASIIIGGGAIKRTIDSNSLINSCHYKNDTQTVLMLRSSSMSPTMMSPT
GETMGDDVGSPGSNYEMSQQMKRKDIFTQRKQREFIPDAKKDDSYWDRRRRNNEAAKRSR
EKRRFNDMVLEQRVIELTKENHVLKAQLDAIKDKYNISGENLVSVDQILATLPTSEQVLS
LTKRLKPNSVHSNGTNDEDEHYAPRLVTPKPTVNYTQAPAQREHQIHPIDSSQPPQIIYG
SRQSQNSPFVAHAAEEQQQQLPTPQPQIIRVSPASQPQHLQASQQQQQQPVPSTPVITSL
FKPLHPTNVQHQQQQSSPQQPHHQPHDLHKFILLNKNGESLNNNNNNDKKQSSNGVAVIS
NEKMIIVNDEKAPRESVFPHIQLTKFLTNTVKSNYISHHTFSHHLHHHHHHPAHHELETS
SVLNLSRRTISNGSGSDIGNDNEVEHFGTNEYYNEFANNGGGSNGNQSDRSSTVDDGEHD
HDMEHTSNGSTVSNVSMDHASLPLKLRHKTHFLGEKESAATALLALHNIKQEPTPTSHSH
SPVWDGENSSDERDSGISIEHRDVNPSEWSNIQRKIIVNASTTPENFEQFNTLIVSEPNG
NDRNIHLKSHLARLESEISTIKNMMILSSNSNSAPINA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g3762.t1 | CDD | cd14694 | bZIP_NFIL3 | 101 | 160 | 2.27573E-32 |
| 5 | g3762.t1 | Coils | Coil | Coil | 134 | 154 | - |
| 4 | g3762.t1 | Gene3D | G3DSA:1.20.5.170 | - | 90 | 161 | 1.3E-16 |
| 9 | g3762.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 210 | - |
| 11 | g3762.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 293 | - |
| 12 | g3762.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 494 | - |
| 13 | g3762.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 486 | - |
| 10 | g3762.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 554 | - |
| 2 | g3762.t1 | PANTHER | PTHR15284 | NUCLEAR FACTOR INTERLEUKIN-3-REGULATED PROTEIN | 48 | 626 | 6.8E-72 |
| 1 | g3762.t1 | Pfam | PF07716 | Basic region leucine zipper | 101 | 152 | 3.4E-17 |
| 8 | g3762.t1 | ProSitePatterns | PS00036 | Basic-leucine zipper (bZIP) domain signature. | 108 | 122 | - |
| 14 | g3762.t1 | ProSiteProfiles | PS50217 | Basic-leucine zipper (bZIP) domain profile. | 102 | 156 | 10.369 |
| 7 | g3762.t1 | SMART | SM00338 | brlzneu | 100 | 164 | 1.3E-11 |
| 3 | g3762.t1 | SUPERFAMILY | SSF57959 | Leucine zipper domain | 100 | 157 | 3.56E-16 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K12114 (vrille)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
