General information for g3762.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3762 is located on chr_3: 27871857..27878522 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3762 | g3762.t2 | isoform | g3762.t2 | 27868799 | 27870466 |
| chr_3 | g3762 | g3762.t2 | exon | g3762.t2.exon1 | 27868799 | 27870466 |
| chr_3 | g3762 | g3762.t2 | TTS | g3762.t2 | 27868803 | 27868803 |
| chr_3 | g3762 | g3762.t2 | cds | g3762.t2.CDS1 | 27869949 | 27870419 |
| chr_3 | g3762 | g3762.t2 | TSS | g3762.t2 | NA | NA |
Sequences
>g3762.t2 Gene=g3762 Length=1668
AGAGCGATAGAAGTAGTACAGTTGATGATGGTGAACATGATCATGATATGGAACATACAT
CAAATGGCAGCACAGTCAGTAATGTGTCAATGGATCATGCTAGTTTACCACTTAAATTAC
GACACAAAACGCATTTCTTGGGTGAAAAAGAATCAGCAGCAACTGCACTTCTTGCACTTC
ACAATATCAAGCAAGAACCAACACCAACTTCACACTCACATTCGCCTGTTTGGGATGGTG
AAAATTCATCAGATGAAAGAGATTCAGGGATTAGTATTGAACATCGTGATGTAAATCCGT
CCGAATGGTCGAATATTCAAAGGAAAATTATCGTCAATGCAAGCACAACGCCTGAGAATT
TTGAACAGTTTAACACGCTCATTGTGAGCGAACCAAATGGAAATGATAGAAATATTCATT
TAAAGTCACATCTTGCTAGATTAGAGTCAGAAATCTCAACCATCAAGAATATGATGATTC
TGAGTTCAAATAGCAACAGTGCACCAATTAATGCATAAAATATCTGACTCTAAATAAAAC
TTTCTAAGTCTCTTCTTCTTACTTTTTACAATTTTTTTTTCTCTCTCTCTTTCTTTTAAA
AATACTTTCACTTGAAAATTCGTTAACTTGAAGAAATTAAATTATAGTGAAATTTAAAGT
TTTTCAGGGAATTTTATGAAGTATAAATTTTAAATTTCACCAAAATATGAATTGATGAAT
TTTCATTGGAAAATTTCTTATCAAGTTGAAAGTTATTTTGGTTTATTGACAAAAATTTTC
ATTAGAAATGTATATTTTTGTATAATATTGAAATTAATTAATGTTTTACTTGAAAATTGA
TTTTGGAAGTGGAAGTTTCAAAAATAAACAAAACATTCAAATTTTAAAATGTTGTTATTT
TTGAAATTTTTATTTTTTTCTAAATTTCAACAGAGAGTAAAAGGAAATAAGAAATGAATG
TTCAAAAAATGAAATTTTGTCAATAATTCAAAGAGCTTCTACTTGAAATAAGTAAAAAAA
GAGAGAAGAGAAAATTTCCTATAACTAGAACACAGATTAATAAATGTTTATTGAAAAAAT
TAATTTTAAAGAAATAAAATTCACATTATAATAATTATCAAAAATTTGTGGTAAAACCAC
ACTTTGGAAAAAAATTATTAATAATTAATAATTGGTATAAATGAGAGTAAAAGGGAAATG
AAAGAAAGGATAAGAAGTGGAAGAATGAGTAAAATAAACTATAAATATTAGAATATTTAA
GAATATATAAAAAATTATATCAAAATTCGATTAAGTCCTTCTACTTTTTTATAAAACAAA
AATTTTATGTATATTATAAATCTATTCATATTCACATCATAATTACTGAATAAGATAAAT
ATCAATTTTTATTGAAATACAAAAAATACTGATACAAACAGTTTTAAGATGATATGATGC
AAATAAACACACACATAAATTTTATTTATTAAACAATTATAAATATAGTTATAATAAGAA
AGAAAGAACCAAGATGGTCATCAAATGGAATGATTTGAATGAAAAATATTAGAAATTTTA
ACTAACAAAATGATATAAATTATGTTTTTATTGTGTAAGAGAGGAAATTTTTGTATTAAT
TAAAGAAATGAAATATTTAATTAAAGATTTGTAGTTTTGTTAAGTCAA
>g3762.t2 Gene=g3762 Length=156
MEHTSNGSTVSNVSMDHASLPLKLRHKTHFLGEKESAATALLALHNIKQEPTPTSHSHSP
VWDGENSSDERDSGISIEHRDVNPSEWSNIQRKIIVNASTTPENFEQFNTLIVSEPNGND
RNIHLKSHLARLESEISTIKNMMILSSNSNSAPINA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3762.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 77 | - |
| 1 | g3762.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 77 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
