General information for g3762.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Nuclear factor interleukin-3-regulated protein.
Parent gene
- The parent gene g3762 is located on chr_3: 27871857..27878522 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3762 | g3762.t3 | isoform | g3762.t3 | 27871049 | 27878522 |
| chr_3 | g3762 | g3762.t3 | exon | g3762.t3.exon1 | 27871049 | 27871747 |
| chr_3 | g3762 | g3762.t3 | cds | g3762.t3.CDS1 | 27871050 | 27871747 |
| chr_3 | g3762 | g3762.t3 | exon | g3762.t3.exon2 | 27871856 | 27872049 |
| chr_3 | g3762 | g3762.t3 | cds | g3762.t3.CDS2 | 27871856 | 27871973 |
| chr_3 | g3762 | g3762.t3 | exon | g3762.t3.exon3 | 27878036 | 27878522 |
| chr_3 | g3762 | g3762.t3 | TSS | g3762.t3 | 27878523 | 27878523 |
| chr_3 | g3762 | g3762.t3 | TTS | g3762.t3 | NA | NA |
Sequences
>g3762.t3 Gene=g3762 Length=1380
TTGTTATTTTGCACATCGAAGTGATAGCACGTATTTCTGCGAGACGGGTGAAATTATTAT
TTTGTCTGTTAGAAGAGCAAACAAAAAAGTTTTCTTATAAAAATAAATAAAAATTACATT
GGATGACGAAAGAGTTTAAAAATTGGTGACTAATGATAAAATACTGAAAAATAAAACAAA
AGGGAAAAAACATAAAAAGTGAGACAATTTATTAAGAATTGTAAAAATAAGCCGAATATT
TTTCATTCATTCATACACACAAGTGGAAAGAAAGTGGAAAAAATTTCGTGGATTTTTGTT
TATAAATATTACTCAGCACATTTTCTAAGAGAAGTGAGAATCAAAACAAGAGATAAAAAT
AATAAATAAGTTTATTTCGCAACTAACAGAAATTATCACGTAAATAAAAATTGTCGTTAA
AGACGCAAATATTCCGGATTACCCAAAAAAAGAAAAATATTTTTTTATAGAACGAGCATA
ACACAATAAATGTTCTTTATCACGTGGATTGTTAAAAACTGTGACAATCAATTAGCATTT
ATCTAAAATAAATATTTTATGTGATGGTGACTGAGCTTCAACACCATCAAGAAAGTGGAG
CATCCATAATTATCGGTGGAGGAGCCATAAAGCGAACTATCGATTCAAATTCATTAATCA
ATTCGTGTCATTATAAAAACGACACTCAAACTGTCTTAATGCTAAGATCATCATCAATGA
GTCCGACAATGATGAGTCCAACAGGAGAGACCATGGGAGATGATGTTGGATCACCAGGTT
CAAATTACGAAATGTCACAACAAATGAAACGTAAAGATATTTTTACACAACGTAAACAAC
GCGAATTTATCCCAGATGCAAAGAAAGACGACAGCTATTGGGATAGACGTCGTCGTAATA
ATGAAGCAGCAAAACGATCAAGAGAAAAGCGAAGATTCAATGATATGGTGCTTGAACAAC
GAGTAATTGAACTGACTAAAGAAAATCATGTATTAAAAGCACAACTTGATGCGATTAAAG
ACAAATATAACATAAGTGGTGAAAATTTAGTTAGTGTCGATCAAATTTTAGCCACATTGC
CTACAAGTGAGCAAGTTTTGAGTCTTACAAAGCGATTGAAGCCCAATTCAGTACATTCAA
ATGGCACAAATGATGAAGATGAACATTATGCACCACGTTTAGTGACACCAAAACCAACAG
TGAATTATACCCAAGCACCAGCACAGCGTGAACATCAAATTCATCCAATTGATAGTTCAC
AGCCACCACAAATTATCTATGGCAGTCGACAGAGTCAAAATAGTCCATTTGTAGCACATG
CTGCTGAAGAACAACAGCAACAATTACCAACACCACAGCCTCAAATTATTCGTGTATCGC
>g3762.t3 Gene=g3762 Length=272
MVTELQHHQESGASIIIGGGAIKRTIDSNSLINSCHYKNDTQTVLMLRSSSMSPTMMSPT
GETMGDDVGSPGSNYEMSQQMKRKDIFTQRKQREFIPDAKKDDSYWDRRRRNNEAAKRSR
EKRRFNDMVLEQRVIELTKENHVLKAQLDAIKDKYNISGENLVSVDQILATLPTSEQVLS
LTKRLKPNSVHSNGTNDEDEHYAPRLVTPKPTVNYTQAPAQREHQIHPIDSSQPPQIIYG
SRQSQNSPFVAHAAEEQQQQLPTPQPQIIRVS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g3762.t3 | CDD | cd14694 | bZIP_NFIL3 | 101 | 160 | 1.11827E-32 |
| 6 | g3762.t3 | Coils | Coil | Coil | 134 | 154 | - |
| 5 | g3762.t3 | Gene3D | G3DSA:1.20.5.170 | - | 89 | 162 | 3.9E-17 |
| 10 | g3762.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 272 | - |
| 2 | g3762.t3 | PANTHER | PTHR15284:SF0 | GH23983P | 38 | 247 | 9.4E-60 |
| 3 | g3762.t3 | PANTHER | PTHR15284 | NUCLEAR FACTOR INTERLEUKIN-3-REGULATED PROTEIN | 38 | 247 | 9.4E-60 |
| 1 | g3762.t3 | Pfam | PF07716 | Basic region leucine zipper | 101 | 152 | 9.9E-18 |
| 9 | g3762.t3 | ProSitePatterns | PS00036 | Basic-leucine zipper (bZIP) domain signature. | 108 | 122 | - |
| 11 | g3762.t3 | ProSiteProfiles | PS50217 | Basic-leucine zipper (bZIP) domain profile. | 102 | 156 | 10.369 |
| 8 | g3762.t3 | SMART | SM00338 | brlzneu | 100 | 164 | 1.3E-11 |
| 4 | g3762.t3 | SUPERFAMILY | SSF57959 | Leucine zipper domain | 100 | 157 | 9.38E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K12114 (vrille)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
