General information for g3765.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Transducin-like enhancer protein 4.
Parent gene
- The parent gene g3765 is located on chr_3: 27911436..27912026 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3765 | g3765.t3 | TSS | g3765.t3 | 27908546 | 27908546 |
| chr_3 | g3765 | g3765.t3 | isoform | g3765.t3 | 27909127 | 27910147 |
| chr_3 | g3765 | g3765.t3 | exon | g3765.t3.exon1 | 27909127 | 27909168 |
| chr_3 | g3765 | g3765.t3 | cds | g3765.t3.CDS1 | 27909127 | 27909168 |
| chr_3 | g3765 | g3765.t3 | exon | g3765.t3.exon2 | 27909237 | 27909398 |
| chr_3 | g3765 | g3765.t3 | cds | g3765.t3.CDS2 | 27909237 | 27909398 |
| chr_3 | g3765 | g3765.t3 | exon | g3765.t3.exon3 | 27909460 | 27909504 |
| chr_3 | g3765 | g3765.t3 | cds | g3765.t3.CDS3 | 27909460 | 27909504 |
| chr_3 | g3765 | g3765.t3 | exon | g3765.t3.exon4 | 27909577 | 27909714 |
| chr_3 | g3765 | g3765.t3 | cds | g3765.t3.CDS4 | 27909577 | 27909714 |
| chr_3 | g3765 | g3765.t3 | exon | g3765.t3.exon5 | 27909776 | 27910024 |
| chr_3 | g3765 | g3765.t3 | cds | g3765.t3.CDS5 | 27909776 | 27910024 |
| chr_3 | g3765 | g3765.t3 | exon | g3765.t3.exon6 | 27910084 | 27910147 |
| chr_3 | g3765 | g3765.t3 | cds | g3765.t3.CDS6 | 27910084 | 27910146 |
| chr_3 | g3765 | g3765.t3 | TTS | g3765.t3 | 27910144 | 27910144 |
Sequences
>g3765.t3 Gene=g3765 Length=700
ATGTACTCAAACGCAGCAGCAGCTTCAGTTCCGAGGCATCAGGGCCCTCAATCGTCAACA
CAGCCGTTTAAATTTACAGTTACAGAAAATTGTGAACGAATAAAGGAGGAGTTTAATTTC
TTACAATCACAGTATCACAATTTAAAATTAGAATGCGAGAAGTTAGCTCAAGAGAAGACA
GAAATGCAACGACATTATGTAATGTATTATGAAATGTCTTATGGATTAAATGTGGAAATG
CATAAGCAAACGGAAATTTCAAAAAGATTAACTGCTTTAATAAATCAATTGGTGCCATTT
CTCTCACAAGAACATCAGCAACAAGTCTTATCAGCAGTTGAGCGTGCTAAGCAAATTACA
ATGTCAGAATTAAATGCTGTGATAGGGCAACAACGCGATTTACCGAGAATACTCCAACAA
ATGCATGCTCAACCAATACCAGGAGGTGGTGCATTACCAATTCCACTTCATCCCTCTGCT
GCTTCTTTAAATAATGTGCCTGTTCCAATTCAAGGTGGTGGTGGAGCGGCAGCTGCTTTG
CTTAAAAATCAAGAACTTATGATGCATAGTCGTTCAGAAGATAACAAAGTTGGTGGTGGT
GGTCCAAATGAAGATAACAGTTTACATGCACGGAGTATGAATTCAATATCTCCTGCACGT
TCAGATATAATCACTACTCAGGAAATTAAGAAAATAAAGA
>g3765.t3 Gene=g3765 Length=233
MYSNAAAASVPRHQGPQSSTQPFKFTVTENCERIKEEFNFLQSQYHNLKLECEKLAQEKT
EMQRHYVMYYEMSYGLNVEMHKQTEISKRLTALINQLVPFLSQEHQQQVLSAVERAKQIT
MSELNAVIGQQRDLPRILQQMHAQPIPGGGALPIPLHPSAASLNNVPVPIQGGGGAAAAL
LKNQELMMHSRSEDNKVGGGGPNEDNSLHARSMNSISPARSDIITTQEIKKIK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g3765.t3 | Coils | Coil | Coil | 31 | 65 | - |
| 6 | g3765.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - |
| 5 | g3765.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 233 | - |
| 4 | g3765.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 224 | - |
| 2 | g3765.t3 | PANTHER | PTHR10814:SF29 | TRANSDUCIN-LIKE ENHANCER PROTEIN 1 | 12 | 180 | 5.5E-68 |
| 3 | g3765.t3 | PANTHER | PTHR10814 | TRANSDUCIN-LIKE ENHANCER PROTEIN | 12 | 180 | 5.5E-68 |
| 1 | g3765.t3 | Pfam | PF03920 | Groucho/TLE N-terminal Q-rich domain | 13 | 132 | 3.8E-66 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0005515 | protein binding | MF |
| GO:0006355 | regulation of transcription, DNA-templated | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed