Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Transducin-like enhancer protein 3-B.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3765 g3765.t4 TSS g3765.t4 27908546 27908546
chr_3 g3765 g3765.t4 isoform g3765.t4 27909127 27910147
chr_3 g3765 g3765.t4 exon g3765.t4.exon1 27909127 27909398
chr_3 g3765 g3765.t4 cds g3765.t4.CDS1 27909378 27909398
chr_3 g3765 g3765.t4 exon g3765.t4.exon2 27909460 27909504
chr_3 g3765 g3765.t4 cds g3765.t4.CDS2 27909460 27909504
chr_3 g3765 g3765.t4 exon g3765.t4.exon3 27909577 27909714
chr_3 g3765 g3765.t4 cds g3765.t4.CDS3 27909577 27909714
chr_3 g3765 g3765.t4 exon g3765.t4.exon4 27909776 27910024
chr_3 g3765 g3765.t4 cds g3765.t4.CDS4 27909776 27910024
chr_3 g3765 g3765.t4 exon g3765.t4.exon5 27910084 27910147
chr_3 g3765 g3765.t4 cds g3765.t4.CDS5 27910084 27910146
chr_3 g3765 g3765.t4 TTS g3765.t4 27910144 27910144

Sequences

>g3765.t4 Gene=g3765 Length=768
ATGTACTCAAACGCAGCAGCAGCTTCAGTTCCGAGGCATCAGGTATAAAATTTCTTAGAA
AATGATCCTTTCTCATAATTAGATTTGTATGAAATAATTTTTAATTTTAGGGCCCTCAAT
CGTCAACACAGCCGTTTAAATTTACAGTTACAGAAAATTGTGAACGAATAAAGGAGGAGT
TTAATTTCTTACAATCACAGTATCACAATTTAAAATTAGAATGCGAGAAGTTAGCTCAAG
AGAAGACAGAAATGCAACGACATTATGTAATGTATTATGAAATGTCTTATGGATTAAATG
TGGAAATGCATAAGCAAACGGAAATTTCAAAAAGATTAACTGCTTTAATAAATCAATTGG
TGCCATTTCTCTCACAAGAACATCAGCAACAAGTCTTATCAGCAGTTGAGCGTGCTAAGC
AAATTACAATGTCAGAATTAAATGCTGTGATAGGGCAACAACGCGATTTACCGAGAATAC
TCCAACAAATGCATGCTCAACCAATACCAGGAGGTGGTGCATTACCAATTCCACTTCATC
CCTCTGCTGCTTCTTTAAATAATGTGCCTGTTCCAATTCAAGGTGGTGGTGGAGCGGCAG
CTGCTTTGCTTAAAAATCAAGAACTTATGATGCATAGTCGTTCAGAAGATAACAAAGTTG
GTGGTGGTGGTCCAAATGAAGATAACAGTTTACATGCACGGAGTATGAATTCAATATCTC
CTGCACGTTCAGATATAATCACTACTCAGGAAATTAAGAAAATAAAGA

>g3765.t4 Gene=g3765 Length=172
MQRHYVMYYEMSYGLNVEMHKQTEISKRLTALINQLVPFLSQEHQQQVLSAVERAKQITM
SELNAVIGQQRDLPRILQQMHAQPIPGGGALPIPLHPSAASLNNVPVPIQGGGGAAAALL
KNQELMMHSRSEDNKVGGGGPNEDNSLHARSMNSISPARSDIITTQEIKKIK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g3765.t4 MobiDBLite mobidb-lite consensus disorder prediction 131 172 -
5 g3765.t4 MobiDBLite mobidb-lite consensus disorder prediction 146 163 -
2 g3765.t4 PANTHER PTHR10814:SF29 TRANSDUCIN-LIKE ENHANCER PROTEIN 1 1 119 2.3E-38
3 g3765.t4 PANTHER PTHR10814 TRANSDUCIN-LIKE ENHANCER PROTEIN 1 119 2.3E-38
1 g3765.t4 Pfam PF03920 Groucho/TLE N-terminal Q-rich domain 1 71 1.4E-37

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005634 nucleus CC
GO:0005515 protein binding MF
GO:0006355 regulation of transcription, DNA-templated BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed