General information for g3766.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Transcription factor Dp-1.
Parent gene
- The parent gene g3766 is located on chr_3: 27912383..27913824 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3766 | g3766.t1 | TTS | g3766.t1 | 27912318 | 27912318 |
| chr_3 | g3766 | g3766.t1 | isoform | g3766.t1 | 27912383 | 27913824 |
| chr_3 | g3766 | g3766.t1 | exon | g3766.t1.exon1 | 27912383 | 27912895 |
| chr_3 | g3766 | g3766.t1 | cds | g3766.t1.CDS1 | 27912383 | 27912895 |
| chr_3 | g3766 | g3766.t1 | exon | g3766.t1.exon2 | 27912952 | 27913381 |
| chr_3 | g3766 | g3766.t1 | cds | g3766.t1.CDS2 | 27912952 | 27913381 |
| chr_3 | g3766 | g3766.t1 | exon | g3766.t1.exon3 | 27913452 | 27913522 |
| chr_3 | g3766 | g3766.t1 | cds | g3766.t1.CDS3 | 27913452 | 27913522 |
| chr_3 | g3766 | g3766.t1 | exon | g3766.t1.exon4 | 27913620 | 27913684 |
| chr_3 | g3766 | g3766.t1 | cds | g3766.t1.CDS4 | 27913620 | 27913684 |
| chr_3 | g3766 | g3766.t1 | exon | g3766.t1.exon5 | 27913785 | 27913824 |
| chr_3 | g3766 | g3766.t1 | cds | g3766.t1.CDS5 | 27913785 | 27913824 |
| chr_3 | g3766 | g3766.t1 | TSS | g3766.t1 | 27913898 | 27913898 |
Sequences
>g3766.t1 Gene=g3766 Length=1119
ATGAGCTCTCAACGCGCTTATATCTTATCTGATGGCAATGGAAAAAAGCAACTTATTACA
TCGTCAGGAATTCGAAAGGATGTTCACATATCGCAACAGCAACAGATTCTAATAAGCAAC
ACAAGCGATAGGATACATTATCAGCCTAATTCTTCTGTAGCATCATCTCGACGAAGTTTT
CCTGCAAATTCCACACCGTCAAATCTTTCATCACTGAATAAAAAAAATGATAAAAAGCGG
GGCGAAAAGCAGGGCAAAGGATTGCGGCATTTTTCTATGAGAGTATGTCAAAAGGTAAAA
GAAAAGGGTGTCACAACTTATAACGAAGTTGCTGATGAACTTGTGCTAGAAGAATGTGAA
GATGTCAATGGCTCGTCATCATCAAATGTTCAATCCTATGATCAAAAAAATTTGCGTCGT
CGAGTTTATGATGCTTTAAATGTTCTCATGGCCATGAATATAATCTCAAAGGAAAAGAAA
GAGATCCGATGGATTGGTTTGCCAACATCATCTGCACAAGAATGTGAAGAACTTGAAGTA
CAAAATCAACAAACTAGAAAACGAATAGAAGAAAAACAGAAGCAATTGCGAGAATTAGTT
TTAAAGCATGTGTCATTAAAAAGTCTCATTGAACGAAATAAAAATTTGGAAAAGCAAGGA
ATTATTCCATCAGCAACTTCAGCTGTTCAATTGCCATTTATCGTCATCAATACAAATAAA
AAGACACACATTGATTGCAATATTTCAAATGATAAACGTGAATATTTGCTCAAGTTTGAT
GATAAATTTGAGGTACAAGATGATATTGAAGTATTGAAGCGTATGGGTCTGTTATTAGGT
ATGGATAAGGGAGAATCGTCAGCCAGTGACATTGATAAATTGAAGAAAATGGTTCCTAAA
GCTTATCAAAAGTACATTGAAATGTATGCCAATGGCTATTTGGCTGCATCAGAAACTCAT
GAAGAAACATTAGATGGGGAAGAGGATTGGACAATGGTTGATCAAACGCAAAGTAGTTTT
TCTCAAGAAGATTCCGAAGAGTTGATTGCCTATGAGCCAGAATATGTTGAGGAGATTGAG
TATGGAGATGGCAACTCCATAACTGAAAATTATTCTTAA
>g3766.t1 Gene=g3766 Length=372
MSSQRAYILSDGNGKKQLITSSGIRKDVHISQQQQILISNTSDRIHYQPNSSVASSRRSF
PANSTPSNLSSLNKKNDKKRGEKQGKGLRHFSMRVCQKVKEKGVTTYNEVADELVLEECE
DVNGSSSSNVQSYDQKNLRRRVYDALNVLMAMNIISKEKKEIRWIGLPTSSAQECEELEV
QNQQTRKRIEEKQKQLRELVLKHVSLKSLIERNKNLEKQGIIPSATSAVQLPFIVINTNK
KTHIDCNISNDKREYLLKFDDKFEVQDDIEVLKRMGLLLGMDKGESSASDIDKLKKMVPK
AYQKYIEMYANGYLAASETHEETLDGEEDWTMVDQTQSSFSQEDSEELIAYEPEYVEEIE
YGDGNSITENYS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g3766.t1 | CDD | cd14458 | DP_DD | 171 | 275 | 3.09729E-42 |
| 9 | g3766.t1 | Coils | Coil | Coil | 175 | 202 | - |
| 8 | g3766.t1 | Gene3D | G3DSA:1.10.10.10 | winged helix repressor DNA binding domain | 77 | 171 | 9.5E-41 |
| 7 | g3766.t1 | Gene3D | G3DSA:1.20.140.80 | - | 172 | 313 | 2.2E-51 |
| 13 | g3766.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 87 | - |
| 14 | g3766.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 72 | - |
| 15 | g3766.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 87 | - |
| 3 | g3766.t1 | PANTHER | PTHR12548:SF5 | TRANSCRIPTION FACTOR DP-2 | 69 | 345 | 1.9E-100 |
| 4 | g3766.t1 | PANTHER | PTHR12548 | TRANSCRIPTION FACTOR DP | 69 | 345 | 1.9E-100 |
| 2 | g3766.t1 | Pfam | PF02319 | E2F/DP family winged-helix DNA-binding domain | 85 | 166 | 5.5E-22 |
| 1 | g3766.t1 | Pfam | PF08781 | Transcription factor DP | 173 | 308 | 3.4E-51 |
| 11 | g3766.t1 | SMART | SM01372 | E2F_TDP_2 | 83 | 166 | 1.5E-30 |
| 12 | g3766.t1 | SMART | SM01138 | DP_2 | 173 | 316 | 2.2E-63 |
| 5 | g3766.t1 | SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 86 | 167 | 2.86E-21 |
| 6 | g3766.t1 | SUPERFAMILY | SSF144074 | E2F-DP heterodimerization region | 173 | 313 | 7.32E-46 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0005667 | transcription regulator complex | CC |
| GO:0051726 | regulation of cell cycle | BP |
KEGG
Orthology
- This transcript has been annotated with K04683 (transcription factor Dp-1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
