General information for g3766.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Transcription factor Dp-1.
Parent gene
- The parent gene g3766 is located on chr_3: 27912383..27913824 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3766 | g3766.t10 | TTS | g3766.t10 | 27912318 | 27912318 |
| chr_3 | g3766 | g3766.t10 | isoform | g3766.t10 | 27912383 | 27913824 |
| chr_3 | g3766 | g3766.t10 | exon | g3766.t10.exon1 | 27912383 | 27912895 |
| chr_3 | g3766 | g3766.t10 | cds | g3766.t10.CDS1 | 27912383 | 27912895 |
| chr_3 | g3766 | g3766.t10 | exon | g3766.t10.exon2 | 27912952 | 27913381 |
| chr_3 | g3766 | g3766.t10 | cds | g3766.t10.CDS2 | 27912952 | 27913381 |
| chr_3 | g3766 | g3766.t10 | exon | g3766.t10.exon3 | 27913452 | 27913522 |
| chr_3 | g3766 | g3766.t10 | cds | g3766.t10.CDS3 | 27913452 | 27913522 |
| chr_3 | g3766 | g3766.t10 | exon | g3766.t10.exon4 | 27913616 | 27913824 |
| chr_3 | g3766 | g3766.t10 | cds | g3766.t10.CDS4 | 27913616 | 27913645 |
| chr_3 | g3766 | g3766.t10 | TSS | g3766.t10 | 27913898 | 27913898 |
Sequences
>g3766.t10 Gene=g3766 Length=1223
ATGAGCTCTCAACGCGCTTATATCTTATCTGATGGCAATGGTAAGCTATTTAAGCCCAAT
AATCATTCATTTAGTCAAATATTTACATTGAAAATTGGGAAATTAACACTGCGTTTGCAA
AATTAATTTATTCAATTCAGGAAAAAAGCAACTTATTACATCGTCAGGAATTCGAAAGGA
TGTTCACATATCGCAACAGCAACAGGCAAATTCTAATAAGCAACACAAGCGATAGGATAC
ATTATCAGCCTAATTCTTCTGTAGCATCATCTCGACGAAGTTTTCCTGCAAATTCCACAC
CGTCAAATCTTTCATCACTGAATAAAAAAAATGATAAAAAGCGGGGCGAAAAGCAGGGCA
AAGGATTGCGGCATTTTTCTATGAGAGTATGTCAAAAGGTAAAAGAAAAGGGTGTCACAA
CTTATAACGAAGTTGCTGATGAACTTGTGCTAGAAGAATGTGAAGATGTCAATGGCTCGT
CATCATCAAATGTTCAATCCTATGATCAAAAAAATTTGCGTCGTCGAGTTTATGATGCTT
TAAATGTTCTCATGGCCATGAATATAATCTCAAAGGAAAAGAAAGAGATCCGATGGATTG
GTTTGCCAACATCATCTGCACAAGAATGTGAAGAACTTGAAGTACAAAATCAACAAACTA
GAAAACGAATAGAAGAAAAACAGAAGCAATTGCGAGAATTAGTTTTAAAGCATGTGTCAT
TAAAAAGTCTCATTGAACGAAATAAAAATTTGGAAAAGCAAGGAATTATTCCATCAGCAA
CTTCAGCTGTTCAATTGCCATTTATCGTCATCAATACAAATAAAAAGACACACATTGATT
GCAATATTTCAAATGATAAACGTGAATATTTGCTCAAGTTTGATGATAAATTTGAGGTAC
AAGATGATATTGAAGTATTGAAGCGTATGGGTCTGTTATTAGGTATGGATAAGGGAGAAT
CGTCAGCCAGTGACATTGATAAATTGAAGAAAATGGTTCCTAAAGCTTATCAAAAGTACA
TTGAAATGTATGCCAATGGCTATTTGGCTGCATCAGAAACTCATGAAGAAACATTAGATG
GGGAAGAGGATTGGACAATGGTTGATCAAACGCAAAGTAGTTTTTCTCAAGAAGATTCCG
AAGAGTTGATTGCCTATGAGCCAGAATATGTTGAGGAGATTGAGTATGGAGATGGCAACT
CCATAACTGAAAATTATTCTTAA
>g3766.t10 Gene=g3766 Length=347
MFTYRNSNRQILISNTSDRIHYQPNSSVASSRRSFPANSTPSNLSSLNKKNDKKRGEKQG
KGLRHFSMRVCQKVKEKGVTTYNEVADELVLEECEDVNGSSSSNVQSYDQKNLRRRVYDA
LNVLMAMNIISKEKKEIRWIGLPTSSAQECEELEVQNQQTRKRIEEKQKQLRELVLKHVS
LKSLIERNKNLEKQGIIPSATSAVQLPFIVINTNKKTHIDCNISNDKREYLLKFDDKFEV
QDDIEVLKRMGLLLGMDKGESSASDIDKLKKMVPKAYQKYIEMYANGYLAASETHEETLD
GEEDWTMVDQTQSSFSQEDSEELIAYEPEYVEEIEYGDGNSITENYS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g3766.t10 | CDD | cd14458 | DP_DD | 146 | 250 | 2.11838E-42 |
| 9 | g3766.t10 | Coils | Coil | Coil | 150 | 177 | - |
| 8 | g3766.t10 | Gene3D | G3DSA:1.10.10.10 | winged helix repressor DNA binding domain | 52 | 146 | 8.3E-41 |
| 7 | g3766.t10 | Gene3D | G3DSA:1.20.140.80 | - | 147 | 288 | 1.9E-51 |
| 13 | g3766.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 47 | - |
| 15 | g3766.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 62 | - |
| 14 | g3766.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 62 | - |
| 3 | g3766.t10 | PANTHER | PTHR12548:SF5 | TRANSCRIPTION FACTOR DP-2 | 45 | 320 | 7.8E-101 |
| 4 | g3766.t10 | PANTHER | PTHR12548 | TRANSCRIPTION FACTOR DP | 45 | 320 | 7.8E-101 |
| 2 | g3766.t10 | Pfam | PF02319 | E2F/DP family winged-helix DNA-binding domain | 60 | 141 | 4.9E-22 |
| 1 | g3766.t10 | Pfam | PF08781 | Transcription factor DP | 148 | 283 | 3.0E-51 |
| 11 | g3766.t10 | SMART | SM01372 | E2F_TDP_2 | 58 | 141 | 1.5E-30 |
| 12 | g3766.t10 | SMART | SM01138 | DP_2 | 148 | 291 | 2.2E-63 |
| 5 | g3766.t10 | SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 61 | 142 | 2.45E-21 |
| 6 | g3766.t10 | SUPERFAMILY | SSF144074 | E2F-DP heterodimerization region | 148 | 288 | 6.28E-46 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0005667 | transcription regulator complex | CC |
| GO:0051726 | regulation of cell cycle | BP |
KEGG
Orthology
- This transcript has been annotated with K04683 (transcription factor Dp-1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
