General information for g3766.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Transcription factor Dp.
Parent gene
- The parent gene g3766 is located on chr_3: 27912383..27913824 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3766 | g3766.t9 | TTS | g3766.t9 | 27912318 | 27912318 |
| chr_3 | g3766 | g3766.t9 | isoform | g3766.t9 | 27912383 | 27913824 |
| chr_3 | g3766 | g3766.t9 | exon | g3766.t9.exon1 | 27912383 | 27912895 |
| chr_3 | g3766 | g3766.t9 | cds | g3766.t9.CDS1 | 27912383 | 27912895 |
| chr_3 | g3766 | g3766.t9 | exon | g3766.t9.exon2 | 27912952 | 27913381 |
| chr_3 | g3766 | g3766.t9 | cds | g3766.t9.CDS2 | 27912952 | 27913281 |
| chr_3 | g3766 | g3766.t9 | exon | g3766.t9.exon3 | 27913452 | 27913522 |
| chr_3 | g3766 | g3766.t9 | exon | g3766.t9.exon4 | 27913620 | 27913824 |
| chr_3 | g3766 | g3766.t9 | TSS | g3766.t9 | 27913898 | 27913898 |
Sequences
>g3766.t9 Gene=g3766 Length=1219
ATGAGCTCTCAACGCGCTTATATCTTATCTGATGGCAATGGTAAGCTATTTAAGCCCAAT
AATCATTCATTTAGTCAAATATTTACATTGAAAATTGGGAAATTAACACTGCGTTTGCAA
AATTAATTTATTCAATTCAGGAAAAAAGCAACTTATTACATCGTCAGGAATTCGAAAGGA
TGTTCACATATCGCAACAGCAACAGATTCTAATAAGCAACACAAGCGATAGGATACATTA
TCAGCCTAATTCTTCTGTAGCATCATCTCGACGAAGTTTTCCTGCAAATTCCACACCGTC
AAATCTTTCATCACTGAATAAAAAAAATGATAAAAAGCGGGGCGAAAAGCAGGGCAAAGG
ATTGCGGCATTTTTCTATGAGAGTATGTCAAAAGGTAAAAGAAAAGGGTGTCACAACTTA
TAACGAAGTTGCTGATGAACTTGTGCTAGAAGAATGTGAAGATGTCAATGGCTCGTCATC
ATCAAATGTTCAATCCTATGATCAAAAAAATTTGCGTCGTCGAGTTTATGATGCTTTAAA
TGTTCTCATGGCCATGAATATAATCTCAAAGGAAAAGAAAGAGATCCGATGGATTGGTTT
GCCAACATCATCTGCACAAGAATGTGAAGAACTTGAAGTACAAAATCAACAAACTAGAAA
ACGAATAGAAGAAAAACAGAAGCAATTGCGAGAATTAGTTTTAAAGCATGTGTCATTAAA
AAGTCTCATTGAACGAAATAAAAATTTGGAAAAGCAAGGAATTATTCCATCAGCAACTTC
AGCTGTTCAATTGCCATTTATCGTCATCAATACAAATAAAAAGACACACATTGATTGCAA
TATTTCAAATGATAAACGTGAATATTTGCTCAAGTTTGATGATAAATTTGAGGTACAAGA
TGATATTGAAGTATTGAAGCGTATGGGTCTGTTATTAGGTATGGATAAGGGAGAATCGTC
AGCCAGTGACATTGATAAATTGAAGAAAATGGTTCCTAAAGCTTATCAAAAGTACATTGA
AATGTATGCCAATGGCTATTTGGCTGCATCAGAAACTCATGAAGAAACATTAGATGGGGA
AGAGGATTGGACAATGGTTGATCAAACGCAAAGTAGTTTTTCTCAAGAAGATTCCGAAGA
GTTGATTGCCTATGAGCCAGAATATGTTGAGGAGATTGAGTATGGAGATGGCAACTCCAT
AACTGAAAATTATTCTTAA
>g3766.t9 Gene=g3766 Length=280
MRVCQKVKEKGVTTYNEVADELVLEECEDVNGSSSSNVQSYDQKNLRRRVYDALNVLMAM
NIISKEKKEIRWIGLPTSSAQECEELEVQNQQTRKRIEEKQKQLRELVLKHVSLKSLIER
NKNLEKQGIIPSATSAVQLPFIVINTNKKTHIDCNISNDKREYLLKFDDKFEVQDDIEVL
KRMGLLLGMDKGESSASDIDKLKKMVPKAYQKYIEMYANGYLAASETHEETLDGEEDWTM
VDQTQSSFSQEDSEELIAYEPEYVEEIEYGDGNSITENYS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g3766.t9 | CDD | cd14458 | DP_DD | 79 | 183 | 1.52112E-42 |
| 9 | g3766.t9 | Coils | Coil | Coil | 83 | 110 | - |
| 8 | g3766.t9 | Gene3D | G3DSA:1.10.10.10 | winged helix repressor DNA binding domain | 1 | 79 | 3.8E-33 |
| 7 | g3766.t9 | Gene3D | G3DSA:1.20.140.80 | - | 80 | 221 | 1.1E-51 |
| 3 | g3766.t9 | PANTHER | PTHR12548:SF5 | TRANSCRIPTION FACTOR DP-2 | 1 | 253 | 8.4E-90 |
| 4 | g3766.t9 | PANTHER | PTHR12548 | TRANSCRIPTION FACTOR DP | 1 | 253 | 8.4E-90 |
| 10 | g3766.t9 | PIRSF | PIRSF009404 | Txn_factor_DP | 1 | 257 | 6.1E-93 |
| 2 | g3766.t9 | Pfam | PF02319 | E2F/DP family winged-helix DNA-binding domain | 2 | 74 | 3.6E-18 |
| 1 | g3766.t9 | Pfam | PF08781 | Transcription factor DP | 81 | 216 | 1.8E-51 |
| 12 | g3766.t9 | SMART | SM01372 | E2F_TDP_2 | 1 | 74 | 3.0E-20 |
| 13 | g3766.t9 | SMART | SM01138 | DP_2 | 81 | 224 | 2.2E-63 |
| 5 | g3766.t9 | SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 1 | 75 | 3.13E-18 |
| 6 | g3766.t9 | SUPERFAMILY | SSF144074 | E2F-DP heterodimerization region | 81 | 221 | 3.66E-46 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0005667 | transcription regulator complex | CC |
| GO:0051726 | regulation of cell cycle | BP |
KEGG
Orthology
- This transcript has been annotated with K04683 (transcription factor Dp-1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
