General information for g3779.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Prostatic acid phosphatase.
Parent gene
- The parent gene g3779 is located on chr_3: 27945729..27946481 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3779 | g3779.t11 | TTS | g3779.t11 | 27944355 | 27944355 |
| chr_3 | g3779 | g3779.t11 | isoform | g3779.t11 | 27945199 | 27946481 |
| chr_3 | g3779 | g3779.t11 | exon | g3779.t11.exon1 | 27945199 | 27945653 |
| chr_3 | g3779 | g3779.t11 | cds | g3779.t11.CDS1 | 27945199 | 27945653 |
| chr_3 | g3779 | g3779.t11 | exon | g3779.t11.exon2 | 27945714 | 27946255 |
| chr_3 | g3779 | g3779.t11 | cds | g3779.t11.CDS2 | 27945714 | 27945771 |
| chr_3 | g3779 | g3779.t11 | exon | g3779.t11.exon3 | 27946374 | 27946481 |
| chr_3 | g3779 | g3779.t11 | TSS | g3779.t11 | 27946671 | 27946671 |
Sequences
>g3779.t11 Gene=g3779 Length=1105
ATGCTTCGCATAAAAATATTTACACTGTTTGTTATAATACTTTTAAATTTAAATGTGTTG
ATTCATTGTGCCATAGAAAATAATGGGAAACTGATTGCTGCGTCGATTATATTTCGACAT
GGTGATAGGACTCCTGTGGAACCTTATCCCAATGACCCATATAAAGACCAATCACTTTGG
CCAGCACATTTCGGTCAATTAACGAATGTGAGTATATATAAAAAGAATATTATCCTCTTC
TTTTATTTAATATAAATAGCATATAACAATATAATCGAATGAAAATTCATTGCTAACAAA
TTTGTTTAAAATATGGGCCATTAAACTCAACATTGTATGAAATCATCCTCTTTATTATCA
ATTTGCAAACACTCAACGTCACGTGCAGCTCAGGCCTGACGACATTTGTCACTTAATTTG
TTTTGAACATTGATATGCATAATCATCATTTGTTCACACAAATATTCATTATTCAAAAAT
TTCTTCTTTATTTCTGTTTGCATAGACTGGCAAAAGGCAGCATTTTGAACTTGGAAAATG
GTTTCGTGCACGTTACAATAGTTTAGTAAGCGATAAATATAATCCTGATGAAATGCTTGT
ACGTTCAACAGATATGGATCGTACGCTCATGTCGGCTATGAGTAATTTAGGCTTTTATCC
ACCAAAAGATCTCGATATATGGAATGAAGAAATACAATGGCAACCGATCCCAGTTCATAC
TACTCCAGAAAAACTAGATGAGATTCTAGCGGCAAAAAAATCTTGTCCCGTTTATGATTA
TGAATTAAAGAAGCTCTATAAATCACCAGAGTTCAAAGCCTACGATCAAAAGTACAAACC
AATCTATAAATATCTGACACAGTATGCAGGAAAAAAAGTTGACTCGATTCAGAGTGTACA
AAATATTTATTCGTGTTTGCACATTGAACAAATTTATAATTTTACTTTGCCCGAATGGAC
AAAGGAAGTATTTCCTGATAAGATGTTTGAAATTTCTGGACTATCATTTGCTGTCAAAAC
ATACACACCGTTACTTGCACGTTTAAAGACAGGTCCATTATTGAAAGAAATTTTAAATCT
CTTTCAAAACAAAACTGAGGGAAAA
>g3779.t11 Gene=g3779 Length=171
MLVRSTDMDRTLMSAMSNLGFYPPKDLDIWNEEIQWQPIPVHTTPEKLDEILAAKKSCPV
YDYELKKLYKSPEFKAYDQKYKPIYKYLTQYAGKKVDSIQSVQNIYSCLHIEQIYNFTLP
EWTKEVFPDKMFEISGLSFAVKTYTPLLARLKTGPLLKEILNLFQNKTEGK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g3779.t11 | Gene3D | G3DSA:3.40.50.1240 | - | 1 | 171 | 0 |
| 1 | g3779.t11 | PANTHER | PTHR11567 | ACID PHOSPHATASE-RELATED | 3 | 170 | 0 |
| 2 | g3779.t11 | PANTHER | PTHR11567:SF183 | GH28721P-RELATED | 3 | 170 | 0 |
| 3 | g3779.t11 | SUPERFAMILY | SSF53254 | Phosphoglycerate mutase-like | 2 | 170 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003993 | acid phosphatase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
