General information for g3779.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Prostatic acid phosphatase.
Parent gene
- The parent gene g3779 is located on chr_3: 27945729..27946481 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3779 | g3779.t12 | TTS | g3779.t12 | 27944355 | 27944355 |
| chr_3 | g3779 | g3779.t12 | isoform | g3779.t12 | 27945199 | 27946481 |
| chr_3 | g3779 | g3779.t12 | exon | g3779.t12.exon1 | 27945199 | 27945653 |
| chr_3 | g3779 | g3779.t12 | cds | g3779.t12.CDS1 | 27945617 | 27945653 |
| chr_3 | g3779 | g3779.t12 | exon | g3779.t12.exon2 | 27945716 | 27945858 |
| chr_3 | g3779 | g3779.t12 | cds | g3779.t12.CDS2 | 27945716 | 27945858 |
| chr_3 | g3779 | g3779.t12 | exon | g3779.t12.exon3 | 27946157 | 27946255 |
| chr_3 | g3779 | g3779.t12 | cds | g3779.t12.CDS3 | 27946157 | 27946255 |
| chr_3 | g3779 | g3779.t12 | exon | g3779.t12.exon4 | 27946374 | 27946481 |
| chr_3 | g3779 | g3779.t12 | cds | g3779.t12.CDS4 | 27946374 | 27946481 |
| chr_3 | g3779 | g3779.t12 | TSS | g3779.t12 | 27946671 | 27946671 |
Sequences
>g3779.t12 Gene=g3779 Length=805
ATGCTTCGCATAAAAATATTTACACTGTTTGTTATAATACTTTTAAATTTAAATGTGTTG
ATTCATTGTGCCATAGAAAATAATGGGAAACTGATTGCTGCGTCGATTATATTTCGACAT
GGTGATAGGACTCCTGTGGAACCTTATCCCAATGACCCATATAAAGACCAATCACTTTGG
CCAGCACATTTCGGTCAATTAACGAATACTGGCAAAAGGCAGCATTTTGAACTTGGAAAA
TGGTTTCGTGCACGTTACAATAGTTTAGTAAGCGATAAATATAATCCTGATGAAATGCTT
GTACGTTCAACAGATATGGATCGTACGCTCATGTCGGCTATGAGTAATTTGCTTTTATCC
ACCAAAAGATCTCGATATATGGAATGAAGAAATACAATGGCAACCGATCCCAGTTCATAC
TACTCCAGAAAAACTAGATGAGATTCTAGCGGCAAAAAAATCTTGTCCCGTTTATGATTA
TGAATTAAAGAAGCTCTATAAATCACCAGAGTTCAAAGCCTACGATCAAAAGTACAAACC
AATCTATAAATATCTGACACAGTATGCAGGAAAAAAAGTTGACTCGATTCAGAGTGTACA
AAATATTTATTCGTGTTTGCACATTGAACAAATTTATAATTTTACTTTGCCCGAATGGAC
AAAGGAAGTATTTCCTGATAAGATGTTTGAAATTTCTGGACTATCATTTGCTGTCAAAAC
ATACACACCGTTACTTGCACGTTTAAAGACAGGTCCATTATTGAAAGAAATTTTAAATCT
CTTTCAAAACAAAACTGAGGGAAAA
>g3779.t12 Gene=g3779 Length=128
MLRIKIFTLFVIILLNLNVLIHCAIENNGKLIAASIIFRHGDRTPVEPYPNDPYKDQSLW
PAHFGQLTNTGKRQHFELGKWFRARYNSLVSDKYNPDEMLVRSTDMDRTLMSAMSNLLLS
TKRSRYME
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g3779.t12 | CDD | cd07061 | HP_HAP_like | 36 | 117 | 2.80148E-22 |
| 6 | g3779.t12 | Gene3D | G3DSA:3.40.50.1240 | - | 30 | 119 | 2.7E-34 |
| 2 | g3779.t12 | PANTHER | PTHR11567:SF192 | ACID PHOSPHATASE 1, ISOFORM B | 28 | 117 | 6.3E-30 |
| 3 | g3779.t12 | PANTHER | PTHR11567 | ACID PHOSPHATASE-RELATED | 28 | 117 | 6.3E-30 |
| 1 | g3779.t12 | Pfam | PF00328 | Histidine phosphatase superfamily (branch 2) | 55 | 116 | 2.2E-12 |
| 8 | g3779.t12 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 23 | - |
| 9 | g3779.t12 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 5 | - |
| 10 | g3779.t12 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 6 | 15 | - |
| 11 | g3779.t12 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 23 | - |
| 7 | g3779.t12 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 24 | 128 | - |
| 13 | g3779.t12 | ProSitePatterns | PS00616 | Histidine acid phosphatases phosphohistidine signature. | 31 | 45 | - |
| 4 | g3779.t12 | SUPERFAMILY | SSF53254 | Phosphoglycerate mutase-like | 29 | 117 | 1.2E-32 |
| 5 | g3779.t12 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 23 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
