General information for g3786.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Adenosine kinase.
Parent gene
- The parent gene g3786 is located on chr_3: 27959095..27960562 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3786 | g3786.t18 | TTS | g3786.t18 | 27958960 | 27958960 |
| chr_3 | g3786 | g3786.t18 | isoform | g3786.t18 | 27959095 | 27959886 |
| chr_3 | g3786 | g3786.t18 | exon | g3786.t18.exon1 | 27959095 | 27959886 |
| chr_3 | g3786 | g3786.t18 | cds | g3786.t18.CDS1 | 27959095 | 27959550 |
| chr_3 | g3786 | g3786.t18 | TSS | g3786.t18 | 27960679 | 27960679 |
Sequences
>g3786.t18 Gene=g3786 Length=792
AAACCAAATGTTGCAGCGTATTTTGGATGCGTTGGACAAGATAAGAATGCTGAAATTTTA
GAGAAAAGAGCTAGAGCAGATGGTGTTGATGTTTGCTATCAAAAAAATGAAGAGCAGCTG
ACTGGCAGATGTGCGGTACTTATCACAGGAAAGCATAGAAGTCTTATTGCTCATTTAGCA
GCTGCAAATTTCTTTTCTGAAGATCATATCGACAAAAATTTTAAATATGTAGAAAATGCG
GAATATTTCTACATTAGTGGCTTTTTTCTCACAGTCAGTCCGCCTTCGATTCTGAAAGTT
GCCAAGCATGCAAAAGAAAATAATAAATCTCTCCTGATGAATCTATCAGCTCCTTTCATT
TCACAATTGTTTAAAGAGCCTTTAATGCAAGTAATTCCTTATATAGATTTATTGTTTGGC
AATGAATCAGAGGCACTGACATTTGCCAAAGAGCAGAATTTTGGAACGGAGAATCTCAAA
GAAATTGGCTTTAAAATGGTTTCTCTTCCAAAAGAGAATGAAAATCGTCCAAGAATTGTT
ATTTTAACACAAGGCTCACATCCTGTACTTCTGTTCGAGAACAATACTGTTCGCGAATTT
CCTGTGCAAGAAATTAAAGAATGCGATATTGTGGACACAAATGGTGCAGGTGATGGATTT
GTTGGTGGCTTTTTAAGTCAATTTATTCAAAAGAAATCTTTTGACGACTGCATAGCAGTT
GGAATTAGAGCAGCACGAGAAATTATTTTTAGAAGTGGCTGCTCAACTGAAGGAGAATTT
AAATTTTGCTAA
>g3786.t18 Gene=g3786 Length=151
MNLSAPFISQLFKEPLMQVIPYIDLLFGNESEALTFAKEQNFGTENLKEIGFKMVSLPKE
NENRPRIVILTQGSHPVLLFENNTVREFPVQEIKECDIVDTNGAGDGFVGGFLSQFIQKK
SFDDCIAVGIRAAREIIFRSGCSTEGEFKFC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g3786.t18 | CDD | cd01168 | adenosine_kinase | 1 | 145 | 7.20057E-51 |
| 5 | g3786.t18 | Gene3D | G3DSA:3.40.1190.20 | - | 1 | 151 | 2.5E-56 |
| 2 | g3786.t18 | PANTHER | PTHR45769 | - | 1 | 145 | 1.7E-53 |
| 1 | g3786.t18 | Pfam | PF00294 | pfkB family carbohydrate kinase | 1 | 144 | 1.1E-29 |
| 4 | g3786.t18 | ProSitePatterns | PS00584 | pfkB family of carbohydrate kinases signature 2. | 100 | 113 | - |
| 3 | g3786.t18 | SUPERFAMILY | SSF53613 | Ribokinase-like | 1 | 143 | 2.81E-32 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
