General information for g3808.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Persulfide dioxygenase ETHE1, mitochondrial.
Parent gene
- The parent gene g3808 is located on chr_3: 28017730..28026585 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3808 | g3808.t1 | TSS | g3808.t1 | 28016646 | 28016646 |
| chr_3 | g3808 | g3808.t1 | isoform | g3808.t1 | 28017063 | 28022548 |
| chr_3 | g3808 | g3808.t1 | exon | g3808.t1.exon1 | 28017063 | 28017312 |
| chr_3 | g3808 | g3808.t1 | cds | g3808.t1.CDS1 | 28017063 | 28017312 |
| chr_3 | g3808 | g3808.t1 | exon | g3808.t1.exon2 | 28017413 | 28017659 |
| chr_3 | g3808 | g3808.t1 | cds | g3808.t1.CDS2 | 28017413 | 28017659 |
| chr_3 | g3808 | g3808.t1 | exon | g3808.t1.exon3 | 28017730 | 28017915 |
| chr_3 | g3808 | g3808.t1 | cds | g3808.t1.CDS3 | 28017730 | 28017915 |
| chr_3 | g3808 | g3808.t1 | exon | g3808.t1.exon4 | 28018016 | 28018134 |
| chr_3 | g3808 | g3808.t1 | cds | g3808.t1.CDS4 | 28018016 | 28018134 |
| chr_3 | g3808 | g3808.t1 | exon | g3808.t1.exon5 | 28022481 | 28022548 |
| chr_3 | g3808 | g3808.t1 | cds | g3808.t1.CDS5 | 28022481 | 28022548 |
| chr_3 | g3808 | g3808.t1 | TTS | g3808.t1 | NA | NA |
Sequences
>g3808.t1 Gene=g3808 Length=870
ATGAACGGAATTATGATAGCTAAACGAAGTTTGACCACACTTCTCAGTCGTACGCAAAAC
CTGTCTAAAGAAAGGCAGTTTATTTTCAACAATTTAAAGCAAGCAAGATTTTGTGCTTAT
CTAGCAATGCAACAAAGAACTCCATATTCAAGAGATTTTTTCTTTCGTCAACTATTTGAC
GAAAAGTCATGGACTTATTCATATCTCTTGGCCGATGTCAATACGAAAGAAGCCGTTATC
ATAGATCCAGTCTTAGAACATGCTCCACGCGATTCGAAAATCATTCACGAACTAGGCTTG
AAATTAAAATTTGCAATGAATACTCATTGTCATGCAGATCACATTACTGGTTCAGGATAT
TTAAAAAAATTGTTGCCCGGAACTTTAAGCGTGATTGGAGGAAAAGCTGGTGCAAATGCT
GATCGCTTTTTGGTAGATGAAGAAACGGTAGAATTCGGAAGGCATAAAATTGTAGCATAT
GAGACACCAGGACACACTAATGGCTGTATGACTTTTGTTATTCACGAACAAGGTATTGCT
TTCACTGGTGATGCTCTATTGATTCGTGGTTGCGGAAGAACTGATTTTCAAGAGGGTGAT
CCTAAGACTCTTTATAAGTCAGTCCATAACAAAATTCTCTCACTGCCAGACAACTTTGTC
CTCTATCCAGCACACGATTATCAAGGCCGAACAGAAACTACTGTTGCGGAAGAAAAGAAG
TACAATCCAAGATTGACAAGAAGTATTGAAGAATTTGTTGAAATTATGAACAATTTAAAC
CTACCTTATCCAAAACAAATTGATAAAGCTGTTCCTGCAAATCGTGAATGTGGAGTTTAT
GATATCCCAGCTGAAGAACCTAAAAAATAG
>g3808.t1 Gene=g3808 Length=289
MNGIMIAKRSLTTLLSRTQNLSKERQFIFNNLKQARFCAYLAMQQRTPYSRDFFFRQLFD
EKSWTYSYLLADVNTKEAVIIDPVLEHAPRDSKIIHELGLKLKFAMNTHCHADHITGSGY
LKKLLPGTLSVIGGKAGANADRFLVDEETVEFGRHKIVAYETPGHTNGCMTFVIHEQGIA
FTGDALLIRGCGRTDFQEGDPKTLYKSVHNKILSLPDNFVLYPAHDYQGRTETTVAEEKK
YNPRLTRSIEEFVEIMNNLNLPYPKQIDKAVPANRECGVYDIPAEEPKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g3808.t1 | CDD | cd07724 | POD-like_MBL-fold | 54 | 227 | 0 |
| 6 | g3808.t1 | Gene3D | G3DSA:3.60.15.10 | - | 48 | 279 | 0 |
| 2 | g3808.t1 | PANTHER | PTHR43084:SF1 | PERSULFIDE DIOXYGENASE ETHE1, MITOCHONDRIAL | 44 | 281 | 0 |
| 3 | g3808.t1 | PANTHER | PTHR43084 | PERSULFIDE DIOXYGENASE ETHE1 | 44 | 281 | 0 |
| 1 | g3808.t1 | Pfam | PF00753 | Metallo-beta-lactamase superfamily | 66 | 213 | 0 |
| 5 | g3808.t1 | SMART | SM00849 | Lactamase_B_5a | 64 | 225 | 0 |
| 4 | g3808.t1 | SUPERFAMILY | SSF56281 | Metallo-hydrolase/oxidoreductase | 56 | 278 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K17725 (sulfur dioxygenase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
