General information for g3808.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Persulfide dioxygenase ETHE1, mitochondrial.
Parent gene
- The parent gene g3808 is located on chr_3: 28017730..28026585 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3808 | g3808.t16 | TSS | g3808.t16 | 28017107 | 28017107 |
| chr_3 | g3808 | g3808.t16 | isoform | g3808.t16 | 28017730 | 28026582 |
| chr_3 | g3808 | g3808.t16 | exon | g3808.t16.exon1 | 28017730 | 28017915 |
| chr_3 | g3808 | g3808.t16 | cds | g3808.t16.CDS1 | 28017740 | 28017915 |
| chr_3 | g3808 | g3808.t16 | exon | g3808.t16.exon2 | 28018016 | 28018134 |
| chr_3 | g3808 | g3808.t16 | cds | g3808.t16.CDS2 | 28018016 | 28018134 |
| chr_3 | g3808 | g3808.t16 | exon | g3808.t16.exon3 | 28022481 | 28022576 |
| chr_3 | g3808 | g3808.t16 | cds | g3808.t16.CDS3 | 28022481 | 28022548 |
| chr_3 | g3808 | g3808.t16 | exon | g3808.t16.exon4 | 28026404 | 28026582 |
| chr_3 | g3808 | g3808.t16 | TTS | g3808.t16 | 28026576 | 28026576 |
Sequences
>g3808.t16 Gene=g3808 Length=580
TAATGGCTGTATGACTTTTGTTATTCACGAACAAGGTATTGCTTTCACTGGTGATGCTCT
ATTGATTCGTGGTTGCGGAAGAACTGATTTTCAAGAGGGTGATCCTAAGACTCTTTATAA
GTCAGTCCATAACAAAATTCTCTCACTGCCAGACAACTTTGTCCTCTATCCAGCACACGA
TTATCAAGGCCGAACAGAAACTACTGTTGCGGAAGAAAAGAAGTACAATCCAAGATTGAC
AAGAAGTATTGAAGAATTTGTTGAAATTATGAACAATTTAAACCTACCTTATCCAAAACA
AATTGATAAAGCTGTTCCTGCAAATCGTGAATGTGGAGTTTATGATATCCCAGCTGAAGA
ACCTAAAAAATAGAGCTACTACAGTTGTTAAAAATTCACAAGATTTTTATTAAAAAAATG
GAAATCTAGCTGGTCTGATGAATTCATCAAAATTATTGTTGGTGTTTGCAATATATCATT
TTTATTTTTCTATAGATTGTTTTATTTTTTATATACAAAAAATTCATACTTATTAAAAGT
GCAAATTTTTCACAATAAAAATGTTAATATCTCTTAAAAT
>g3808.t16 Gene=g3808 Length=120
MTFVIHEQGIAFTGDALLIRGCGRTDFQEGDPKTLYKSVHNKILSLPDNFVLYPAHDYQG
RTETTVAEEKKYNPRLTRSIEEFVEIMNNLNLPYPKQIDKAVPANRECGVYDIPAEEPKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g3808.t16 | Gene3D | G3DSA:3.60.15.10 | - | 1 | 110 | 0 |
| 1 | g3808.t16 | PANTHER | PTHR43084:SF1 | PERSULFIDE DIOXYGENASE ETHE1, MITOCHONDRIAL | 2 | 112 | 0 |
| 2 | g3808.t16 | PANTHER | PTHR43084 | PERSULFIDE DIOXYGENASE ETHE1 | 2 | 112 | 0 |
| 3 | g3808.t16 | SUPERFAMILY | SSF56281 | Metallo-hydrolase/oxidoreductase | 1 | 109 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
