General information for g3808.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Persulfide dioxygenase ETHE1, mitochondrial.
Parent gene
- The parent gene g3808 is located on chr_3: 28017730..28026585 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3808 | g3808.t6 | isoform | g3808.t6 | 28016593 | 28022577 |
| chr_3 | g3808 | g3808.t6 | exon | g3808.t6.exon1 | 28016593 | 28016807 |
| chr_3 | g3808 | g3808.t6 | exon | g3808.t6.exon2 | 28017045 | 28017312 |
| chr_3 | g3808 | g3808.t6 | exon | g3808.t6.exon3 | 28017413 | 28017915 |
| chr_3 | g3808 | g3808.t6 | cds | g3808.t6.CDS1 | 28017704 | 28017915 |
| chr_3 | g3808 | g3808.t6 | exon | g3808.t6.exon4 | 28018016 | 28018134 |
| chr_3 | g3808 | g3808.t6 | cds | g3808.t6.CDS2 | 28018016 | 28018134 |
| chr_3 | g3808 | g3808.t6 | exon | g3808.t6.exon5 | 28022481 | 28022577 |
| chr_3 | g3808 | g3808.t6 | cds | g3808.t6.CDS3 | 28022481 | 28022548 |
| chr_3 | g3808 | g3808.t6 | TSS | g3808.t6 | NA | NA |
| chr_3 | g3808 | g3808.t6 | TTS | g3808.t6 | NA | NA |
Sequences
>g3808.t6 Gene=g3808 Length=1202
CATGTATATATACAAAAAAATATTATCAACAATAGACAACTAGTCACCCTGTCAGTTGGT
GTTATTTTAATTTTCGGCAACAGCATTTTTATTAACTTTTTCTATTAATACAGAAATTTA
TTTTATCTAATCGAAATAATAATATTTGCAATCAACAGTCAGAATTGTGAAAATTAAGAA
TTCATTCGTCAACTGATAGCTAACAAGAACGGAAGTACATTGATATATAAAAAATGAACG
GAATTATGATAGCTAAACGAAGTTTGACCACACTTCTCAGTCGTACGCAAAACCTGTCTA
AAGAAAGGCAGTTTATTTTCAACAATTTAAAGCAAGCAAGATTTTGTGCTTATCTAGCAA
TGCAACAAAGAACTCCATATTCAAGAGATTTTTTCTTTCGTCAACTATTTGACGAAAAGT
CATGGACTTATTCATATCTCTTGGCCGATGTCAATACGAAAGAAGCCGTTATCATAGATC
CAGTCTTAGAACATGCTCCACGCGATTCGAAAATCATTCACGAACTAGGCTTGAAATTAA
AATTTGCAATGAATACTCATTGTCATGCAGATCACATTACTGGTTCAGGATATTTAAAAA
AATTGTTGCCCGGAACTTTAAGCGTGATTGGAGGAAAAGCTGGTGCAAATGCTGATCGCT
TTTTGGTAGATGAAGAAACGGTAGAATTCGGAAGGCATAAAATTGTAGCATATGAGACAC
CAGGACACACGTAATAATTTTAAGTTCAAATTGATTTTTTACGTATCATTGATTATGTCC
ATTTTAACACCAACATTTAGTAATGGCTGTATGACTTTTGTTATTCACGAACAAGGTATT
GCTTTCACTGGTGATGCTCTATTGATTCGTGGTTGCGGAAGAACTGATTTTCAAGAGGGT
GATCCTAAGACTCTTTATAAGTCAGTCCATAACAAAATTCTCTCACTGCCAGACAACTTT
GTCCTCTATCCAGCACACGATTATCAAGGCCGAACAGAAACTACTGTTGCGGAAGAAAAG
AAGTACAATCCAAGATTGACAAGAAGTATTGAAGAATTTGTTGAAATTATGAACAATTTA
AACCTACCTTATCCAAAACAAATTGATAAAGCTGTTCCTGCAAATCGTGAATGTGGAGTT
TATGATATCCCAGCTGAAGAACCTAAAAAATAGAGCTACTACAGTTGTTAAAAATTCACA
AG
>g3808.t6 Gene=g3808 Length=132
MSILTPTFSNGCMTFVIHEQGIAFTGDALLIRGCGRTDFQEGDPKTLYKSVHNKILSLPD
NFVLYPAHDYQGRTETTVAEEKKYNPRLTRSIEEFVEIMNNLNLPYPKQIDKAVPANREC
GVYDIPAEEPKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g3808.t6 | Gene3D | G3DSA:3.60.15.10 | - | 2 | 122 | 0 |
| 1 | g3808.t6 | PANTHER | PTHR43084:SF1 | PERSULFIDE DIOXYGENASE ETHE1, MITOCHONDRIAL | 5 | 124 | 0 |
| 2 | g3808.t6 | PANTHER | PTHR43084 | PERSULFIDE DIOXYGENASE ETHE1 | 5 | 124 | 0 |
| 3 | g3808.t6 | SUPERFAMILY | SSF56281 | Metallo-hydrolase/oxidoreductase | 3 | 121 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
