Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Alcohol dehydrogenase class-2 isozyme 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3809 g3809.t5 TSS g3809.t5 28044968 28044968
chr_3 g3809 g3809.t5 isoform g3809.t5 28045795 28046698
chr_3 g3809 g3809.t5 exon g3809.t5.exon1 28045795 28046698
chr_3 g3809 g3809.t5 cds g3809.t5.CDS1 28045854 28046156
chr_3 g3809 g3809.t5 TTS g3809.t5 NA NA

Sequences

>g3809.t5 Gene=g3809 Length=904
AGAAAGAGTTCGATGGTGGTTTCGATTACACTTTTGAATGTATTGGTCTTATTGAGACAA
TGACACAAGCTTGGGAATCAACATTTTTGGGTCATGGTGAATGCATTATTATTGGAGTTG
ATGCCAAAGAAAAAATGCTTTCAATTTCTCCTTTTGCCACTCTTTTTGGTAAAAAAATTC
GAGGATCTGCCTTTGGCGGTTATAAAAGTGAAGATTTACCAAAATTGGTTGAGAAATACA
TCAAAGGCGAATTGAATTTTGATGAAATGATTACACATAATTTGACATTGAATGATATCA
AGAAAGCAATTGAATTACTTGAAAGTGGCAAATCTATAAGAAGTGTTTTGAAAATGAACT
AAGAAAAACATATTTCAAGTATTCCCATAAAAGTTTATCCAAGTAAAAGTTTCATAAAAT
CAACTTGAGCGGTTTTTATTTCAACAAATTTAAAAAGATTTTCTCTCATTTTTTTCTGCG
TTCTATGAATAAAAAAGAAAAATTTTCTCTAATTGAAACAAAAATAAGACAGAAGAATTT
TTTCCCTCTCGGATAAAAACAGAGAATGAATTTTTTATATAAAAACTGTTATACATTTCA
TCAATTGTTCGCTTCTTTTTTGATGATTGTTGAATGTTTTTTTTATTATTTGTAATTCTT
TAGAAAGTCATTTCTATTCGAAAATGTTTCTATGTAAAATTTAAAATTAAGAAAATTTTA
ATAAAAATTTTTATTTGATTATCAAATAAAAATTATCAACTTTTGCAAAAAAATAAGTAA
AATTCGCAATTTTATTTCTAAAAATACATATAATAATGTTTCTTTTGTATCTTCTCGATT
TTCTCTCTCGACAAAATCCCAAACAACAACTTATTAACATTTTTTTCCTAATGTTCATTT
CAGT

>g3809.t5 Gene=g3809 Length=100
MTQAWESTFLGHGECIIIGVDAKEKMLSISPFATLFGKKIRGSAFGGYKSEDLPKLVEKY
IKGELNFDEMITHNLTLNDIKKAIELLESGKSIRSVLKMN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g3809.t5 Gene3D G3DSA:3.40.50.720 - 1 43 0
4 g3809.t5 Gene3D G3DSA:3.90.180.10 - 44 96 0
1 g3809.t5 PANTHER PTHR43880 ALCOHOL DEHYDROGENASE 1 97 0
2 g3809.t5 SUPERFAMILY SSF50129 GroES-like 48 97 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed