General information for g3809.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Amyloid-beta-like protein.
Parent gene
- The parent gene g3809 is located on chr_3: 28064662..28065912 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3809 | g3809.t7 | isoform | g3809.t7 | 28064662 | 28065500 |
| chr_3 | g3809 | g3809.t7 | exon | g3809.t7.exon1 | 28064662 | 28065299 |
| chr_3 | g3809 | g3809.t7 | cds | g3809.t7.CDS1 | 28064848 | 28065299 |
| chr_3 | g3809 | g3809.t7 | exon | g3809.t7.exon2 | 28065361 | 28065500 |
| chr_3 | g3809 | g3809.t7 | cds | g3809.t7.CDS2 | 28065361 | 28065499 |
| chr_3 | g3809 | g3809.t7 | TTS | g3809.t7 | 28066015 | 28066015 |
| chr_3 | g3809 | g3809.t7 | TSS | g3809.t7 | NA | NA |
Sequences
>g3809.t7 Gene=g3809 Length=778
GGTCATCGTGTTGAAAAATGCTTACAAAAACTTCTTCGTGCTCTTCATAAGGATCGTGCA
CATGCATTGGCTCATTATCGTCATCTTTTGAGCTCAGGTGGAACAGGTGGTCTTGAAGCT
GCAGCACAAGAACGTCCACGCACATTGGAACGTTTGATTGATATTGATCGTGCCGTAAAT
CAATCAATGACAATGCTAAAACGTTATCCATCACTTTCAAAGAAACTTTCACAACTTATG
GAAGATTATATTCAAGCATTGCGTTCAAAGGACGATACACCTGGTCTTTTACTTTCAATG
ACAGAAGAAGCAGAATCAGGAATTTTGGATAAATACCGTATTGAGATTGAACGAAAAGTA
AATGAAAAAGAACGACAGCGTGTTGCTGAAAAGCAACGTAAAGAACAACGTTCACAGGAG
CGTGAAAAGATTCGAGAAGAAAAGATGCGTTTACAAGCAAAGAATGCTGAAAAAGCTTAT
CGTGCACAACAAATGAAAGAGAAAGATCAACAACAAGATCATCAAGAACAAGAGACAAAG
ACAGAAGCTGCACAACAATCGTCCAAGGAGCAGACAAGTGAAGCTGCTATTGATGTTAAA
GAAACAACTGTTGAATACACTGAAGAATCAGTTTATCTAACTTCACCAACATCATTGCCA
ACAGTTGATGATGCAGCTGTTCAACGAGCTGTTGAAGAAGTTGCTGCTGCCGTTGCCCAT
CAAGAAACCGAGCCACAATTAAGTCATGCACGTGCTCATGATTTCGGACATGGAGAAG
>g3809.t7 Gene=g3809 Length=197
MTMLKRYPSLSKKLSQLMEDYIQALRSKDDTPGLLLSMTEEAESGILDKYRIEIERKVNE
KERQRVAEKQRKEQRSQEREKIREEKMRLQAKNAEKAYRAQQMKEKDQQQDHQEQETKTE
AAQQSSKEQTSEAAIDVKETTVEYTEESVYLTSPTSLPTVDDAAVQRAVEEVAAAVAHQE
TEPQLSHARAHDFGHGE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g3809.t7 | Coils | Coil | Coil | 47 | 95 | - |
| 3 | g3809.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 155 | - |
| 5 | g3809.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 118 | - |
| 4 | g3809.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 197 | - |
| 1 | g3809.t7 | PANTHER | PTHR23103:SF15 | AMYLOID-BETA-LIKE PROTEIN | 1 | 195 | 4.2E-19 |
| 2 | g3809.t7 | PANTHER | PTHR23103 | ALZHEIMER’S DISEASE BETA-AMYLOID RELATED | 1 | 195 | 4.2E-19 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
