Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative U5 small nuclear ribonucleoprotein 200 kDa helicase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3816 g3816.t1 TTS g3816.t1 28167573 28167573
chr_3 g3816 g3816.t1 isoform g3816.t1 28167636 28174346
chr_3 g3816 g3816.t1 exon g3816.t1.exon1 28167636 28168731
chr_3 g3816 g3816.t1 cds g3816.t1.CDS1 28167636 28168731
chr_3 g3816 g3816.t1 exon g3816.t1.exon2 28168785 28169083
chr_3 g3816 g3816.t1 cds g3816.t1.CDS2 28168785 28169083
chr_3 g3816 g3816.t1 exon g3816.t1.exon3 28169148 28173978
chr_3 g3816 g3816.t1 cds g3816.t1.CDS3 28169148 28173978
chr_3 g3816 g3816.t1 exon g3816.t1.exon4 28174040 28174203
chr_3 g3816 g3816.t1 cds g3816.t1.CDS4 28174040 28174203
chr_3 g3816 g3816.t1 exon g3816.t1.exon5 28174302 28174346
chr_3 g3816 g3816.t1 cds g3816.t1.CDS5 28174302 28174346
chr_3 g3816 g3816.t1 TSS g3816.t1 28175133 28175133

Sequences

>g3816.t1 Gene=g3816 Length=6435
ATGGCTGACGCTGCTGCACGTCAACTACAATACGAGTACAAGGCTAACTCAAATTTAGTT
TTACAAGCTGATGTTAGATTAATTGAACGACCTAGAAGAGATGAAGCGACTGGTGAAGTA
CTTTCTTTGGTTGGAAAACTCGAAGGCACAAAAATGGGAGATCGAGCTCAACGCTCAAAA
CCGGAAAAAGCTGAAGAGAAAAAAGCAATGCGTCGTAAACGTGATGAACAACAATATGAT
TTTAATAGTATGAGAGGTGCTACATTATTATCTGAAGGAATCGATGATATGGTTGGAATT
ATTTATCGACCAAAAACTCAAGAAACCCGTCAAACATACGAAGTTCTTCTCAGTTTCATC
CAAGAGGCGCTTGGTGATCAACCTAGAGATATTTTGTGTGGTGCTGCAGATGAAATTCTT
GCTGTTCTCAAAAACGACAAATTGAAAGACCGTGAACGGAAAAAGGAAATTGATGGTCTG
CTAGGCACAGTTGCGGAAGAAAGATTTGCATTACTTGTTAATCTTGGCAAGAAAATCACA
GATTTTGGTAGTGATTCACTTAATATTGCAGCACTCGGCATTAATGAAGATCAACAAATT
GATGAGACATATGGTATAAATGTTCAATTTGAAGAATCGTCAGATGAAAGTGTTGACGAT
GATTTCGGAGAAATTCGAGATGATGGTGATCAAGATGAAGGCGAAGAAGCAGTTGGTGAT
GGCGTTATTCATTCAGAAAACTTGGGAGCTTCAGAAGGCGATAAAAAAGAGAAAGCTCTT
CATCCATTAGATATTGATGCTTATTGGTTGCAACGTCGTTTAAGAGACTATTTTCAAGAT
CCTTTAGTATCTCAATCAAAGGCTGATGAAGTTTTAAGTATTTTAAAAAATTCCAATGAT
GATCGAGATTGTGAAAATCAAATGGTATTGCTTTTGGGATATGATTGTTTTGATTTCATC
AAAATTTTAAAAAAGAATCGTCAAATGATTCTTTATTGTACGCTTTTAGCAAAAGCACAA
ACCGAAAATGAACGACAAAGGATTAGAGAGGACATGAAAAATGATGCATTTCTTTTAAAA
GTTTTAAGACAATTGGATACTGGAAAAGGTGAAGATAATGTTGAATATGAAGAGAAAAAC
AAAGCAAAAAAACGTCGCATGAATGATGATGAGGAAGATATGATGATCGAAGATGGAGCT
GGTAAAGTAGAAGGCTCTAGAAAAATGCTTGAATTAGAAGATCTTGTATTTACACAAGGT
TCACATTTTATGGCTAACAAGAAATGTCAATTGCCTGATGGTTCATTCAGAAAACAACGA
AAAGGTTACGAAGAAGTTCATGTACCAGCACTTAAACCTAAACCATTTGATGACGATGAA
AAGTTAATGCCAATTGATAAATTACCAAAATATGTTCAACCAGTTTTTGAAGGATTTAAG
ACATTAAACAGAATTCAAAGTCGATTATGGAAAGCTGCATTAGAGAGTGATGAAAACATG
TTGCTCTGCGCACCCACAGGCGCAGGTAAAACTAATGTGGCTTTGTTAACAATGATGAGA
GAAATCGGAAAACATATTAATGATGATGGAACAATAAATGTTGACGAATTTAAAATTATC
TATATTGCTCCTATGCGTTCACTTGTACAAGAAATGGTGGGAAATTTCGGAAAGCGTCTT
GCTTCATATAACATCACTGTTTCAGAATTGACAGGAGATCATCAACTAAGTCGAGAACAA
ATTCAAGCAACTCAAATAATTGTATGCACTCCCGAAAAATGGGACATTATTACAAGAAAA
GGTGGTGAAAAAACATACACTCAACTTGTGAGATTAATCATCATTGACGAAATTCATCTT
TTACACGATGAGCGTGGTCCAATTTTAGAGAGCATTGTAGCACGTACCATCAGAAATATT
GAGACAACTCAAGAAGAAGTTCGTCTTGTTGGTCTTTCTGCTACTCTCCCAAATTATCAA
GACGTTGCTACTTTCTTACGTGTGAAACAAGATAAGGGTCTTTTTTATTTTGATAATAGC
TTTCGTCCTGTTTCATTACAACAACAATATATTGGTATCACAGAAAAGAAAGCTGTCAAA
CGTTTCCAAATCATGTCAATGATTGTTTATGAAAAGATTATGGAAAAGGCAGGTCGTCAT
CAAGTTCTCGTATTTGTACATTCAAGAAAAGAAACTGGCAAAACAGCAAGAGCGATAAGA
GACATTTGTTTGGAAAAGGATACTTTGGGAAGCTTTTTACATGAGGGTTCAGCAAGTATG
GAAGTTTTACGACAAGAAGCTGAACAAGTAAAAAATTCTGAATTGAAAGATTTACTTCCT
TATGGTTTTGCTATTCATCATGCTGGAATGAATCGTATTGATCGTACATTGGTTGAAGAT
TTATTTGCTGATAAACACATTCAAGTTTTAGTGTCAACATCAACTCTTGCGTGGGGTGTT
AACTTGCCTGCTCATACTGTTATCATTAAAGGCACACAAGTATATAATCCCGAAAAAGGT
CGTTGGACTGAATTAAGTGCTCTTGATGTACTTCAGATGTTGGGTCGTGCGGGTCGTCCT
CAATATGATACAAAAGGCGAAGGCATTCTTATTACAAATCATGGTGAACTTCAATATTAT
TTGTCTTTACTAAATCAACAGTTACCTGTTGAATCACAATTGATTTCAAAATTACCAGAT
ATGTTGAATGCAGAGATAGTTTTGGGAACAATTCAAAATGTCAAAGATGCAGTAACTTGG
CTGGGATATTCTTATCTTTATATTCGTATGATGAGACAACCGACTCTATATGGAATATCT
TACGATCAATTAAAGGATGATGAATTATTGGAAGCGCATCGTGCTGATTTAATTCATACT
GCTGCAGTACAACTAGATCGAAGCGGATTAGTAAAATATGATCGAAAGTCAGGTCATTTT
CAAGTAACAGAATTGGGTAGAATCGCTTCTCATTACTATTGCACACATGAGACAATGCAA
ACTTATAATCAGTTGTTGAAACCAACACTTACCGAAATTGAACTTTTCCGTGTATTTTCA
TTAAGTGGTGAATTCAAAAATATCACCGTGCGTGAAGAAGAGAAATTAGAATTGCAAAAA
CTCATGGAGAGAGTCCCAATTCCAATAAAAGAAAGTATGGAAGAGCCAAGTGCAAAAATA
AATGTTCTGCTTCAGGCTTACATTTCTCAACTTAAACTTGATGGATTTGCACTCATTTCT
GATATGGTTTATGTAACACAATCTGCTGGTCGTTTAGTTCGTGCCATCTTTGAAATTGTT
TTGCATCGAGGTTGGGCACAGTTAGCTGACAAATGTCTCACATTATGTAAAATGATCGAT
CGACGTATGTGGCAATCAATGTCACCGTTAAGACAATTTAGAAAAATGCCCGAGGAAATT
GTTAAAAAGATTGAAAAGAAAAATTTCCCATGGGAACGTCTTTATGATTTACAACCAAAT
GAAATTGGAGAGCTCATTCGTGCACCAAAACTCGGAAAAACAATTCACAAGTTTATTCAT
CAATTTCCAAAACTTGAATTATCTACACATATTCAACCTATTACACGTTCAACTTTGCGT
GTTGAATTAACTATAACACCTGATTTTATTTGGGACGAAAAAGTTCATGGACAATCTGAA
GCTTTTTGGATTTTAGTTGAAGATGTTGATTCTGAAGTTATTTTACATCATGAATACTTT
TTATTGAAAATGAAGTATGCCCAAGATGAACATTTGGTGAAATTTTTTGTTCCAGTTTTT
GAGCCTTTACCGCCACAATATTTCTTGCGTGTTGTCTCTGATCGTTGGATTTCATCTGAA
ACACAATTGCCAGTTAGTTTTCGTCATTTGATTTTACCAGAAAAGAATATGCCACCAACT
GAATTACTTGATTTGCAACCATTGCCGATTACTGCACTTCGTAATCAAGAATATGAAGCA
CTCTATAAATTTCCTCAATTTAATCCGATTCAAACACAAGTTTTCAATGCAGTTTTCAAT
TCTGATGACAATGTCTTTGTTGGTGCACCAACTTCTTCAGGAAAATCAACAATTGCTGAG
TTTGCAATTCTGAGACTCTTTCAGAATAATAAAGATGGGAGATGTGTTTATTTGGTATCA
AATGATGCACTTGCTGATTTAATGTTTATTCAATGGCATAAAAAGTTTGTTGAATCACTA
GGATGGCGTGTCGTGAAATTAACAGGAGAGACTGGTGCAGATTTAAAATTACTTGCTCGC
GGTCAAATTATTGTAACAACGGCAGACAAGTGGGATATTTTATCAAGAAGATGGAAACAA
CGTAAGAATGTTCAAAATGTTAATCTCATTATCGTTGATGAGTTGCATTTGATTGGTGGT
GAAGAAGGTCCCGTTTTAGAAGTTGTCTGTTCAAGAATGCGTTATATTAGTTCTCAAATA
GAGAAACAGATTAGAATTGTAGCACTTTCATCATCATTGGCAGATTATAAAGATGTTGCT
CAATGGCTTGGCTGCAATGCAAATACGACATTTAATTTCCATCCAAGTGTACGACCTATC
CCGTTGGAACTTCACATTCAAGGTTTCAGCATAACGCATCATGCATCAAGAATTGCTGCA
ATGTCAAAACCAGTTTACAATGCTATAATTAAATATAGTCCACATAAGCCGGCTATTGTA
TTTGTTACATCGAGAAAATTAGCACGTTTGACAGCAATTGACATATTGACATATTGTGCA
GCTGAAGGACAATCTTCAAGATTCTTGCATGCTGATGAAGATGATGTAGTTTTTAAACAA
TTCTTGGATAATATTGTCGATAAGACATTAAAAGAAACATTATCACAAGGAGTTGCATAC
ATTCATGAAGGTTTAACTCCATCAGATCGTCGAATGGTAGAAGAACTTTTTGATTCGGGC
GCTGTTCAAGTAGCTGTTGTTACTCGTGAACTCTGCTGGGGATTAAATATTTCATCCTAT
CTTGTTGTTATTATGGACACACAATATTATAATGGAAAAAATCATTCATATGAAGATTAC
AGCACAACTGATGTTATTCAAATGATTGGAAGAGCAAATAGACCCATGGATGACGATGAT
GCAAAATGTGTGCTTATGTGTCAAAATGCAAAGAAAGATTTCTTCAAAAAATTCTTGAAT
GAACCTTTGCCTGTTGAAAGTCATCTTGATCATCGACTACATGATCATTTCAATGCTGAA
ATTGTTACAAAAACTATTGAGAATAAGCAAGATGCAGTCGATTATTTAACATGGACATTC
TTATATCGTCGTTTAACTCAAAATCCAAATTATTATAATTTGCAAGGTGTTTCTCATAGT
TTCCTTTCCGATCATTTGTCAGAATTGGTTGAAACAACATTGAATGATCTTGAACAATCA
AAGTGCATAAGCGTTGAGGATGAAATGGACACATTAGCATTAAATCTTGGAATGATTGCA
GCTTATTATTATATCAACTACACAACTATTGAGTTGTTCAGTTTGTCATTGAACAACAAA
ACTAAAATTCGCGGTTTATTAGAAATTATTTCTTCTGCTGCTGAATATGAAGATGTCGTT
GTTCGTCATCGTGAAGATCTTGTTTTGAAAGCACTTGCACAAAGATTACCAAATAAATTG
ACAGGCGCAAATGGCTCTGCTCCGAAATATAATGATCCACACATTAAAACAAATTTATTG
TTACAAGCTCATTTATCTAGAATTCAATTGAGTGCAGAATTGCAAAGTGACACTGAAACA
ATTTTGGGAAAAGCTATTCGATTAATTCAAGCTTGTGTTGATGTACTTTCCTCTAATGGT
TGGTTATCTCCAGCAGTTGCAGCTATGGAATTGGCTCAAATGGTCACGCAAGCAATGTGG
AGTAAAGATTCATATTTGAAACAGTTGCCACATTTCACAACTGATATCATAAAGAGATGC
CAAGAGAAAAATATTGAAACAATTTTCGATATTATGGAGTTAGAAGATGATGAAAGAAGC
AAATTATTGCAACTCGATGATAGGAAAATGGCTGATGTCGCTCGTTTTTGTAATAGATAT
CCAAATATTGAAATGAATTTCGAAGTTATTGATAAAGATAATATTCGTTCAGGATCAAGT
GTGAATGTTGAAGTACAGCTTGAACGTGAGGATGAAATAACTGGCCCGGTCATTGCGCCA
TTCTTCCCCCAAAAACGCGAAGAAGGATGGTGGGTAGTAATTGGAGATCCGAAAAACAAT
TCATTACTCTCAATCAAGAGACTGACACTGCAGCAAAAAGCAAATGTGAAATTAGATTTT
GTTGCACCCAGTCCTGGAAATTACGAATACACATTGTATTTCATGAGTGATTGTTTCATG
GGAGTTGATCAAGAATATAAATTCAATATTAATGTCGGAGAATATCAATCAGATGACAGC
AGCGATTCTGACTAA

>g3816.t1 Gene=g3816 Length=2144
MADAAARQLQYEYKANSNLVLQADVRLIERPRRDEATGEVLSLVGKLEGTKMGDRAQRSK
PEKAEEKKAMRRKRDEQQYDFNSMRGATLLSEGIDDMVGIIYRPKTQETRQTYEVLLSFI
QEALGDQPRDILCGAADEILAVLKNDKLKDRERKKEIDGLLGTVAEERFALLVNLGKKIT
DFGSDSLNIAALGINEDQQIDETYGINVQFEESSDESVDDDFGEIRDDGDQDEGEEAVGD
GVIHSENLGASEGDKKEKALHPLDIDAYWLQRRLRDYFQDPLVSQSKADEVLSILKNSND
DRDCENQMVLLLGYDCFDFIKILKKNRQMILYCTLLAKAQTENERQRIREDMKNDAFLLK
VLRQLDTGKGEDNVEYEEKNKAKKRRMNDDEEDMMIEDGAGKVEGSRKMLELEDLVFTQG
SHFMANKKCQLPDGSFRKQRKGYEEVHVPALKPKPFDDDEKLMPIDKLPKYVQPVFEGFK
TLNRIQSRLWKAALESDENMLLCAPTGAGKTNVALLTMMREIGKHINDDGTINVDEFKII
YIAPMRSLVQEMVGNFGKRLASYNITVSELTGDHQLSREQIQATQIIVCTPEKWDIITRK
GGEKTYTQLVRLIIIDEIHLLHDERGPILESIVARTIRNIETTQEEVRLVGLSATLPNYQ
DVATFLRVKQDKGLFYFDNSFRPVSLQQQYIGITEKKAVKRFQIMSMIVYEKIMEKAGRH
QVLVFVHSRKETGKTARAIRDICLEKDTLGSFLHEGSASMEVLRQEAEQVKNSELKDLLP
YGFAIHHAGMNRIDRTLVEDLFADKHIQVLVSTSTLAWGVNLPAHTVIIKGTQVYNPEKG
RWTELSALDVLQMLGRAGRPQYDTKGEGILITNHGELQYYLSLLNQQLPVESQLISKLPD
MLNAEIVLGTIQNVKDAVTWLGYSYLYIRMMRQPTLYGISYDQLKDDELLEAHRADLIHT
AAVQLDRSGLVKYDRKSGHFQVTELGRIASHYYCTHETMQTYNQLLKPTLTEIELFRVFS
LSGEFKNITVREEEKLELQKLMERVPIPIKESMEEPSAKINVLLQAYISQLKLDGFALIS
DMVYVTQSAGRLVRAIFEIVLHRGWAQLADKCLTLCKMIDRRMWQSMSPLRQFRKMPEEI
VKKIEKKNFPWERLYDLQPNEIGELIRAPKLGKTIHKFIHQFPKLELSTHIQPITRSTLR
VELTITPDFIWDEKVHGQSEAFWILVEDVDSEVILHHEYFLLKMKYAQDEHLVKFFVPVF
EPLPPQYFLRVVSDRWISSETQLPVSFRHLILPEKNMPPTELLDLQPLPITALRNQEYEA
LYKFPQFNPIQTQVFNAVFNSDDNVFVGAPTSSGKSTIAEFAILRLFQNNKDGRCVYLVS
NDALADLMFIQWHKKFVESLGWRVVKLTGETGADLKLLARGQIIVTTADKWDILSRRWKQ
RKNVQNVNLIIVDELHLIGGEEGPVLEVVCSRMRYISSQIEKQIRIVALSSSLADYKDVA
QWLGCNANTTFNFHPSVRPIPLELHIQGFSITHHASRIAAMSKPVYNAIIKYSPHKPAIV
FVTSRKLARLTAIDILTYCAAEGQSSRFLHADEDDVVFKQFLDNIVDKTLKETLSQGVAY
IHEGLTPSDRRMVEELFDSGAVQVAVVTRELCWGLNISSYLVVIMDTQYYNGKNHSYEDY
STTDVIQMIGRANRPMDDDDAKCVLMCQNAKKDFFKKFLNEPLPVESHLDHRLHDHFNAE
IVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNLQGVSHSFLSDHLSELVETTLNDLEQS
KCISVEDEMDTLALNLGMIAAYYYINYTTIELFSLSLNNKTKIRGLLEIISSAAEYEDVV
VRHREDLVLKALAQRLPNKLTGANGSAPKYNDPHIKTNLLLQAHLSRIQLSAELQSDTET
ILGKAIRLIQACVDVLSSNGWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFTTDIIKRC
QEKNIETIFDIMELEDDERSKLLQLDDRKMADVARFCNRYPNIEMNFEVIDKDNIRSGSS
VNVEVQLEREDEITGPVIAPFFPQKREEGWWVVIGDPKNNSLLSIKRLTLQQKANVKLDF
VAPSPGNYEYTLYFMSDCFMGVDQEYKFNINVGEYQSDDSSDSD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
36 g3816.t1 CDD cd18019 DEXHc_Brr2_1 465 678 9.34673E-147
33 g3816.t1 CDD cd18795 SF2_C_Ski2 682 872 5.00166E-67
35 g3816.t1 CDD cd18021 DEXHc_Brr2_2 1324 1514 3.92242E-111
34 g3816.t1 CDD cd18795 SF2_C_Ski2 1518 1708 4.88509E-44
31 g3816.t1 Coils Coil Coil 373 393 -
21 g3816.t1 Gene3D G3DSA:3.40.50.300 - 473 682 3.8E-187
22 g3816.t1 Gene3D G3DSA:3.40.50.300 - 683 884 3.8E-187
26 g3816.t1 Gene3D G3DSA:1.10.10.2530 - 891 982 1.3E-36
23 g3816.t1 Gene3D G3DSA:1.10.3380.10 - 983 1124 2.1E-60
28 g3816.t1 Gene3D G3DSA:1.10.150.20 5’ to 3’ exonuclease 1125 1181 2.7E-31
30 g3816.t1 Gene3D G3DSA:2.60.40.150 - 1182 1290 2.6E-49
19 g3816.t1 Gene3D G3DSA:3.40.50.300 - 1291 1518 1.1E-87
20 g3816.t1 Gene3D G3DSA:3.40.50.300 - 1519 1726 9.1E-66
25 g3816.t1 Gene3D G3DSA:1.10.10.2530 - 1727 1812 8.8E-37
24 g3816.t1 Gene3D G3DSA:1.10.3380.10 - 1817 1962 1.1E-52
27 g3816.t1 Gene3D G3DSA:1.10.150.20 5’ to 3’ exonuclease 1963 2020 1.7E-30
29 g3816.t1 Gene3D G3DSA:2.60.40.150 - 2021 2142 4.8E-48
45 g3816.t1 MobiDBLite mobidb-lite consensus disorder prediction 51 77 -
8 g3816.t1 PANTHER PTHR24075 SEC63 DOMAIN-CONTAINING 8 2142 0.0
9 g3816.t1 PANTHER PTHR24075:SF13 U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 200 KDA HELICASE 8 2142 0.0
32 g3816.t1 PIRSF PIRSF039073 BRR2 1 2142 0.0
1 g3816.t1 Pfam PF18149 N-terminal helicase PWI domain 257 365 5.5E-37
3 g3816.t1 Pfam PF00270 DEAD/DEAH box helicase 484 659 3.3E-27
4 g3816.t1 Pfam PF00271 Helicase conserved C-terminal domain 713 859 5.5E-7
6 g3816.t1 Pfam PF02889 Sec63 Brl domain 983 1286 6.9E-92
2 g3816.t1 Pfam PF00270 DEAD/DEAH box helicase 1329 1497 4.0E-18
5 g3816.t1 Pfam PF00271 Helicase conserved C-terminal domain 1593 1694 2.7E-6
7 g3816.t1 Pfam PF02889 Sec63 Brl domain 1814 2128 1.2E-77
49 g3816.t1 ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 491 674 21.474
46 g3816.t1 ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile. 685 922 12.65
48 g3816.t1 ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1336 1511 18.18
47 g3816.t1 ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile. 1571 1754 10.509
44 g3816.t1 SMART SM00487 ultradead3 478 690 5.2E-33
37 g3816.t1 SMART SM00382 AAA_5 496 813 0.0046
39 g3816.t1 SMART SM00490 helicmild6 769 861 4.6E-18
42 g3816.t1 SMART SM00973 Sec63_2 982 1287 3.4E-130
43 g3816.t1 SMART SM00487 ultradead3 1323 1523 1.3E-20
38 g3816.t1 SMART SM00382 AAA_5 1341 1545 2.7
40 g3816.t1 SMART SM00490 helicmild6 1608 1696 1.0E-7
41 g3816.t1 SMART SM00973 Sec63_2 1813 2130 3.2E-115
15 g3816.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 379 667 1.73E-44
18 g3816.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 677 889 7.98E-47
10 g3816.t1 SUPERFAMILY SSF46785 Winged helix DNA-binding domain 889 993 2.09E-6
14 g3816.t1 SUPERFAMILY SSF158702 Sec63 N-terminal domain-like 1011 1183 9.94E-55
16 g3816.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1214 1505 8.35E-47
17 g3816.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1513 1724 6.55E-41
11 g3816.t1 SUPERFAMILY SSF46785 Winged helix DNA-binding domain 1724 1825 1.77E-7
13 g3816.t1 SUPERFAMILY SSF158702 Sec63 N-terminal domain-like 1842 2021 2.14E-56
12 g3816.t1 SUPERFAMILY SSF81296 E set domains 2022 2132 9.24E-32

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0003676 nucleic acid binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values