General information for g3819.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Heparan-sulfate 6-O-sulfotransferase 2.
Parent gene
- The parent gene g3819 is located on chr_3: 28178009..28179647 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3819 | g3819.t3 | TTS | g3819.t3 | 28177255 | 28177255 |
| chr_3 | g3819 | g3819.t3 | isoform | g3819.t3 | 28177355 | 28178430 |
| chr_3 | g3819 | g3819.t3 | exon | g3819.t3.exon1 | 28177355 | 28177472 |
| chr_3 | g3819 | g3819.t3 | cds | g3819.t3.CDS1 | 28177355 | 28177472 |
| chr_3 | g3819 | g3819.t3 | exon | g3819.t3.exon2 | 28177535 | 28177754 |
| chr_3 | g3819 | g3819.t3 | cds | g3819.t3.CDS2 | 28177535 | 28177754 |
| chr_3 | g3819 | g3819.t3 | exon | g3819.t3.exon3 | 28177822 | 28177944 |
| chr_3 | g3819 | g3819.t3 | cds | g3819.t3.CDS3 | 28177822 | 28177944 |
| chr_3 | g3819 | g3819.t3 | exon | g3819.t3.exon4 | 28178003 | 28178059 |
| chr_3 | g3819 | g3819.t3 | cds | g3819.t3.CDS4 | 28178003 | 28178059 |
| chr_3 | g3819 | g3819.t3 | exon | g3819.t3.exon5 | 28178138 | 28178218 |
| chr_3 | g3819 | g3819.t3 | cds | g3819.t3.CDS5 | 28178138 | 28178216 |
| chr_3 | g3819 | g3819.t3 | exon | g3819.t3.exon6 | 28178285 | 28178430 |
| chr_3 | g3819 | g3819.t3 | TSS | g3819.t3 | NA | NA |
Sequences
>g3819.t3 Gene=g3819 Length=745
AAGTGTGGCTTGCATGCCGATTGGACTGAACTCATTTCTTGTGTTGACCAAGAGTTTGAT
AAAAATGAGGGTGAGACAACGAAAAGAAGATACTTTTATATTACACTCTTAAGATCGCCT
ATCGCTCGATATCTGTCAGAATATAGACATGTACAACGAGGAGCAACATGGAAAAATTCT
AGACATTTTTGTCTTGGTCGTCAAGCGACGAGTGAAGAACTTCCGCCGAGACGACTGGAT
GGATGTAACTTTGGACGAGTTTGCAGATTGTGAAAGTAATTTGGCTGCAAACCGTCAAAC
TCGAATGCTCGCTGATTTAGCACTAGTTAACTGTTACAATAAGACTGGCATGTCATCTGA
AGAAAGAGACAGAATTATGCTTGCAAGTGCAAAAAGAAACTTGGCGGCCATGTCATTCTT
TGGTCTAACCGAGTATCAAAAAATTTCACAATACATTTTTGAAGAAACTTTCAATCTCAG
GTTTGCAATTCCTTTTGAACAGCACAACTCAACATTGTCCATGCAAGCATTTGAAAGCTT
AACTGAAGCTCAACAAACAAAAATTAAAAAGATTAATGCACTCGATATAGAACTTTATGA
TTTTGCTAAAGAATTAATGTTTCAAAGATTTAAAAGACTCAAAGCCAAAGATAGCGATTT
TAATTTTCATTTTTCTAATTTAGGTAATATTAGAGATAAAGGAAGCGAATTTAATTGGGA
CACTGTAATGGATAATGTAAATTAA
>g3819.t3 Gene=g3819 Length=198
MYNEEQHGKILDIFVLVVKRRVKNFRRDDWMDVTLDEFADCESNLAANRQTRMLADLALV
NCYNKTGMSSEERDRIMLASAKRNLAAMSFFGLTEYQKISQYIFEETFNLRFAIPFEQHN
STLSMQAFESLTEAQQTKIKKINALDIELYDFAKELMFQRFKRLKAKDSDFNFHFSNLGN
IRDKGSEFNWDTVMDNVN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3819.t3 | PANTHER | PTHR12812 | HEPARAN SULFATE 6-O-SULFOTRANSFERASE 3 | 25 | 168 | 0 |
| 3 | g3819.t3 | PANTHER | PTHR12812:SF3 | HEPARAN-SULFATE 6-O-SULFOTRANSFERASE 3 | 25 | 168 | 0 |
| 1 | g3819.t3 | Pfam | PF03567 | Sulfotransferase family | 24 | 153 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008146 | sulfotransferase activity | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed