General information for g383.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Longitudinals lacking protein, isoforms F/I/K/T.
Parent gene
- The parent gene g383 is located on chr_3: 3100658..3101199 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g383 | g383.t1 | isoform | g383.t1 | 3096782 | 3100781 |
| chr_3 | g383 | g383.t1 | exon | g383.t1.exon1 | 3096782 | 3096928 |
| chr_3 | g383 | g383.t1 | cds | g383.t1.CDS1 | 3096782 | 3096928 |
| chr_3 | g383 | g383.t1 | exon | g383.t1.exon2 | 3097096 | 3097874 |
| chr_3 | g383 | g383.t1 | cds | g383.t1.CDS2 | 3097096 | 3097874 |
| chr_3 | g383 | g383.t1 | exon | g383.t1.exon3 | 3098528 | 3098713 |
| chr_3 | g383 | g383.t1 | cds | g383.t1.CDS3 | 3098528 | 3098713 |
| chr_3 | g383 | g383.t1 | exon | g383.t1.exon4 | 3100658 | 3100781 |
| chr_3 | g383 | g383.t1 | cds | g383.t1.CDS4 | 3100658 | 3100781 |
| chr_3 | g383 | g383.t1 | TSS | g383.t1 | NA | NA |
| chr_3 | g383 | g383.t1 | TTS | g383.t1 | NA | NA |
Sequences
>g383.t1 Gene=g383 Length=1236
ATGAACAAAATTGATGATGATGATGATGATGAAATGTTTTTAGAAAACAAATTAAATAAT
CAAAAAAGCATGAAATTTATTAAGAAGAAGAAGAAGAATTTGAGAATGAAAGAATTTCTC
TGTTGCAATAAATCGTATCGCTTTAAGTTGAAGGAACAAACTAAAACACAACAGCCGCAA
ACAACTCATGACATGAATGATTGCCTTCTCGAAAGTGAAAACTTCCAAATAACAAAGGCC
GATAACAACAAGTACCTTCTGCTGCCTGTGAAGAAGCCATCGGCTGAGAAGATTGTACTG
AAGGAATGCGAATTAGTTCCTGTTAAACGCCCGCAAGTCAAAGTAACGACGAAAGTTGAA
AAGTCAGCAAATATCTCAATCGTTCAAAAAGTGCCAGTCGAGACACCTCAATCACAAATT
TCCACAACTACCGGATCAACTACAATTGCAGCAGCACCTGTAGTTGATGGTGAGAAGAAA
ATTGTTAAGACAAATCATCCGCGCATCAAATACTCGCGTCACAAAAATCCCACCATTTTG
GCAAGTTATAATCAAGCACAAGTAGTTCAACCGGCAACAATTCAACCTCAAGCTACAGTG
CAGCCTATTCGCACGCAAGTGTTGTCTGATGGCAAAAAGATCGAGTACATTAGTGTCACA
ACAGTACAACCTGCAGAATCAATTACTAAGCCAATTATTATCCCGGCCACTACAAATACA
CAATTTGTTATTCAGGCAGTTCCAACTAGCGCTAATCAACAAGTAACAGAATATGAAGTC
TCAGCGGCACCAGCAAACACAAGCAGTCAAAGTAGCGACTTCCACAATGAGATTATGGAT
GATTTGGAATATGGTATTGATGATATTGAACTACCTGAGGATGTACAGATTCACTTTAGC
GATTCATACAAGGACGAAAGCGATACACGCGAAACTGTTGGCAACTCTATCAAGAAATAT
TATGCAACTGTCAGTGACAACTCTATTGCCAGTGATAATGAAGAAGCAGGGCGTCAATAT
GAATGCAGACACTGTGGCAAGAAATATCGCTGGAAGTCAACTCTTCGTCGTCATGAAAAT
GTCGAATGTGGTGGAAAAGAAGCCAGTCATCAGTGCCCGTATTGTAGCTACAAAGCAAAG
CAGCGCGGCAATTTGGGCGTTCATATACGCAAGCATCATGCCGATAAGCCACCACTTGAG
ACTCGTCGAACCAAAAAAGCTCTTCACACACGCTAA
>g383.t1 Gene=g383 Length=411
MNKIDDDDDDEMFLENKLNNQKSMKFIKKKKKNLRMKEFLCCNKSYRFKLKEQTKTQQPQ
TTHDMNDCLLESENFQITKADNNKYLLLPVKKPSAEKIVLKECELVPVKRPQVKVTTKVE
KSANISIVQKVPVETPQSQISTTTGSTTIAAAPVVDGEKKIVKTNHPRIKYSRHKNPTIL
ASYNQAQVVQPATIQPQATVQPIRTQVLSDGKKIEYISVTTVQPAESITKPIIIPATTNT
QFVIQAVPTSANQQVTEYEVSAAPANTSSQSSDFHNEIMDDLEYGIDDIELPEDVQIHFS
DSYKDESDTRETVGNSIKKYYATVSDNSIASDNEEAGRQYECRHCGKKYRWKSTLRRHEN
VECGGKEASHQCPYCSYKAKQRGNLGVHIRKHHADKPPLETRRTKKALHTR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g383.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 334 | 364 | 0.0000420 |
| 6 | g383.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 369 | 394 | 0.0000220 |
| 1 | g383.t1 | Pfam | PF13909 | C2H2-type zinc-finger domain | 370 | 393 | 0.0000004 |
| 7 | g383.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 340 | 367 | 11.5520000 |
| 8 | g383.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 370 | 397 | 10.2630000 |
| 3 | g383.t1 | SMART | SM00355 | c2h2final6 | 340 | 360 | 16.0000000 |
| 4 | g383.t1 | SMART | SM00355 | c2h2final6 | 370 | 392 | 0.0055000 |
| 2 | g383.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 338 | 392 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
