General information for g383.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g383 is located on chr_3: 3100658..3101199 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g383 | g383.t3 | isoform | g383.t3 | 3096782 | 3098713 |
| chr_3 | g383 | g383.t3 | exon | g383.t3.exon1 | 3096782 | 3096928 |
| chr_3 | g383 | g383.t3 | cds | g383.t3.CDS1 | 3096891 | 3096928 |
| chr_3 | g383 | g383.t3 | exon | g383.t3.exon2 | 3097098 | 3097874 |
| chr_3 | g383 | g383.t3 | cds | g383.t3.CDS2 | 3097098 | 3097874 |
| chr_3 | g383 | g383.t3 | exon | g383.t3.exon3 | 3098528 | 3098713 |
| chr_3 | g383 | g383.t3 | cds | g383.t3.CDS3 | 3098528 | 3098645 |
| chr_3 | g383 | g383.t3 | TSS | g383.t3 | NA | NA |
| chr_3 | g383 | g383.t3 | TTS | g383.t3 | NA | NA |
Sequences
>g383.t3 Gene=g383 Length=1110
GCAATAAATCGTATCGCTTTAAGTTGAAGGAACAAACTAAAACACAACAGCCGCAAACAA
CTCATGACATGAATGATTGCCTTCTCGAAAGTGAAAACTTCCAAATAACAAAGGCCGATA
ACAACAAGTACCTTCTGCTGCCTGTGAAGAAGCCATCGGCTGAGAAGATTGTACTGAAGG
AATGCGAATTAGTTCCTGTTAAACGCCCGCAAGTCAAAGTAACGACGAAAGTTGAAAAGT
CAGCAAATATCTCAATCGTTCAAAAAGTGCCAGTCGAGACACCTCAATCACAAATTTCCA
CAACTACCGGATCAACTACAATTGCAGCAGCACCTGTAGTTGATGGTGAGAAGAAAATTG
TTAAGACAAATCATCCGCGCATCAAATACTCGCGTCACAAAAATCCCACCATTTTGGCAA
GTTATAATCAAGCACAAGTAGTTCAACCGGCAACAATTCAACCTCAAGCTACAGTGCAGC
CTATTCGCACGCAAGTGTTGTCTGATGGCAAAAAGATCGAGTACATTAGTGTCACAACAG
TACAACCTGCAGAATCAATTACTAAGCCAATTATTATCCCGGCCACTACAAATACACAAT
TTGTTATTCAGGCAGTTCCAACTAGCGCTAATCAACAAGTAACAGAATATGAAGTCTCAG
CGGCACCAGCAAACACAAGCAGTCAAAGTAGCGACTTCCACAATGAGATTATGGATGATT
TGGAATATGGTATTGATGATATTGAACTACCTGAGGATGTACAGATTCACTTTAGCGATT
CATACAAGGACGAAAGCGATACACGCGAAACTGTTGGCAACTCTATCAAGAAATATTATG
CAACTGTCAGTGACAACTCTATTGCCAGTGATAATGAAGAAGCAGGGCGTCAATATGAAT
GCAGACACTGTGGCAAGAAATATCGCTGGAAGTCAACTCTTCGTCGTCATGAAAATGTCG
AATGGTGGAAAAGAAGCCAGTCATCAGTGCCCGTATTGTAGCTACAAAGCAAAGCAGCGC
GGCAATTTGGGCGTTCATATACGCAAGCATCATGCCGATAAGCCACCACTTGAGACTCGT
CGAACCAAAAAAGCTCTTCACACACGCTAA
>g383.t3 Gene=g383 Length=310
MNDCLLESENFQITKADNNKYLLLPVKKPSAEKIVLKECELVPVKRPQVKVTTKVEKSAN
ISIVQKVPVETPQSQISTTTGSTTIAAAPVVDGEKKIVKTNHPRIKYSRHKNPTILASYN
QAQVVQPATIQPQATVQPIRTQVLSDGKKIEYISVTTVQPAESITKPIIIPATTNTQFVI
QAVPTSANQQVTEYEVSAAPANTSSQSSDFHNEIMDDLEYGIDDIELPEDVQIHFSDSYK
DESDTRETVGNSIKKYYATVSDNSIASDNEEAGRQYECRHCGKKYRWKSTLRRHENVEWW
KRSQSSVPVL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g383.t3 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 266 | 298 | 0.0000110 |
| 3 | g383.t3 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 276 | 303 | 10.3460000 |
| 1 | g383.t3 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 274 | 296 | 0.0000523 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
