General information for g3832.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Mushroom body large-type Kenyon cell-specific protein 1.
Parent gene
- The parent gene g3832 is located on chr_3: 28267325..28277014 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3832 | g3832.t1 | isoform | g3832.t1 | 28267325 | 28277014 |
| chr_3 | g3832 | g3832.t1 | exon | g3832.t1.exon1 | 28267325 | 28267343 |
| chr_3 | g3832 | g3832.t1 | cds | g3832.t1.CDS1 | 28267325 | 28267343 |
| chr_3 | g3832 | g3832.t1 | exon | g3832.t1.exon2 | 28271824 | 28271937 |
| chr_3 | g3832 | g3832.t1 | cds | g3832.t1.CDS2 | 28271824 | 28271937 |
| chr_3 | g3832 | g3832.t1 | exon | g3832.t1.exon3 | 28272159 | 28272296 |
| chr_3 | g3832 | g3832.t1 | cds | g3832.t1.CDS3 | 28272159 | 28272296 |
| chr_3 | g3832 | g3832.t1 | exon | g3832.t1.exon4 | 28272358 | 28272587 |
| chr_3 | g3832 | g3832.t1 | cds | g3832.t1.CDS4 | 28272358 | 28272587 |
| chr_3 | g3832 | g3832.t1 | exon | g3832.t1.exon5 | 28272662 | 28272890 |
| chr_3 | g3832 | g3832.t1 | cds | g3832.t1.CDS5 | 28272662 | 28272890 |
| chr_3 | g3832 | g3832.t1 | exon | g3832.t1.exon6 | 28272950 | 28273139 |
| chr_3 | g3832 | g3832.t1 | cds | g3832.t1.CDS6 | 28272950 | 28273139 |
| chr_3 | g3832 | g3832.t1 | exon | g3832.t1.exon7 | 28274806 | 28277014 |
| chr_3 | g3832 | g3832.t1 | cds | g3832.t1.CDS7 | 28274806 | 28277014 |
| chr_3 | g3832 | g3832.t1 | TSS | g3832.t1 | NA | NA |
| chr_3 | g3832 | g3832.t1 | TTS | g3832.t1 | NA | NA |
Sequences
>g3832.t1 Gene=g3832 Length=3129
ATGGATACAAAAGACGAACGATTAGAAAGAGTAGCTGAGGAATTGATGGGACGCAGAAAA
TGGAAACAATATCAAGAGTCTTTAACACAAACAAACACGAATGATTTGATTGAGAAGCAA
TCACCTTCAATTGAAGAAGAAACCAGTAATAACAAGCAGCAGCAGCAGCAACAAAACAGT
GAAAATAATAAAACTGGAATTAAAGCGGAAACACTAGATATAAAGGAAGAAAACAAATTG
ATGACTACAGAAGACGTTAGCGAAAAATTAGAATCAGATTATTGTAAAACAACAATAACA
GACACATCAAATAGAGAGATAGAAGCGACTGAATACAAGAACTCGATCAAAATCGAGACA
ACGCGACCTGAGCCGGTCGATTGGAAACCCGACGACAATTGTAACTTTTGTGTCAACGGA
AAACTGTTAAAAGTGAACGAAATAGGTGAATTAGTCGTTGAGACGGGTCCGGTGCATCCG
GAATCTGAGCTCAACAAGCATATTGTTGAATCAGACGACTCGAGTTCAGGTTCCGATACA
GTGCAAAAAAATAATAATCAACCACAACTTCAATTTCAATCATCGCTGATACAGAAAAAT
TTAGAGACACTGTTAAAGACAGTTGGTCTTAATCCAAATATGACGTCATTAGAATCAATG
GCTGCACAACTTGCAGCATTTCAACGTCTACAAACACCAGAATTAAATCAATTAAATCCA
TTTTATCCGAATCTATTTTATCCATTTCAACAACAACAACAAATATCACCAACTACAACG
CCTGATCGTTCAGCAAGTCCTTCAGTTATTATACCGTCAAATGATGAATCACCGACTGGT
CAAGTGACTGGTGAACAACCTTTAGATCTCAGTGCAAAACCAAGTGGATCTACACAACTT
GAGTCAAAAAATATTTTCAAAGCAAAACCACGAATATCGACTGTGCCTGGTCGACGATCC
TATACAGAAGAAGAATTGAATAATGCACTGCAAGACATTTTAAGTGGAAAATTGGGAACA
AGACGAGCTGCTGTTCTTTATGGTATTCCGAGATCTACATTACGTAATAAAGTTTATAAA
CTGGCCACTGAACAAAGACGTGAATTGTTGGCCAATCATCCACCAATAGCGATTCTTGAG
GATGAAGATGAAAAAGATTCGGGTGGTGAGGAGGAAAAAGATCAACCAAAAGTGGGTGAT
TCAAATGAGCAGTTACAAAATTATTTGAAATTATTAGCTAAAAGTTCAGAGAACTTGAAA
CAAGATCAACATCAAGAGTCAAAAGATAATCGAGGTCCGAGTTCATGGCCCATTGATCCA
ACCGCGTGGATACAAAGTCTTATTCTTGCCAATGGATTTCAGGGAATGGGCGGATTTTCA
TCACTTTTAGGCAATCCATCGTCTACGTCACCTTCGTCATCGCTCTCTCCCAAGCAAGAA
GAGCTACCCGAGTTTCTGAGAAAATTGTTGACACAGCCGCAAGATAACAAGTCTGAGTTT
AATAATAAACTTAAAAACGACATTGACCCACTGATGATGATGAATTTACTACAACAAAAT
AAAAAAACACCCGAGCTTGATATGAATGAAGGTAGCGAAGATTCTAATGCGATTCTTAAA
ATTCCGTCCATTCCGAAAGCGATATTTGGTCAGCAGCCAGCACTTGTAGGAACAGCGACA
CACAGCAAGAATGGTGACATTGTTCATCATTCGGGTTCAAATACTCCTTCCACGTCACCA
CAAATGGCCATTAGTCCACGTTTACAAGTTGGTTCAGCACTTGCAAATCATCTAACTATG
CGATCACCGTCATCATTAATGCGACAAAGAAGTGAATCAGAATCACCAGAACCACGAGCG
AAATTTAATCTTCAAGATGTCATTCGTCAAAGTATTAGTAAAAACTTTCAAACAAATATT
TTGGACGACCCAAAACATTCCACGCCACTTACAATTGATCCAATGAATGATTATCAAAAA
CGACCGACAATTTCGGTTATTAAAAGTCTTGGTGGCACTGATCTTTCACGTTTTGGAACA
AATCCCAATATCACACAATTACAGCAACAACAATTGTCACCAAATAATACTGGAACTGGT
GGAAAAGGTACAAGGCCGAAACGTGGAAAATATCGTAATTATGATCGCGATAGTCTAGTA
GAAGCTGTAAAAGCAGTACAACGTGGTGAAATGTCAGTTCATAGAGCTGGAAGTTATTAT
GGTGTTCCACATTCCACACTTGAATATAAAGTAAAAGAACGACATTTGATGCGTCCAAGA
AAACGTGAACCTAAGCCACAACCACTGGATGGAACTTCGACATCATCATCAGCAGCCTCA
ACTGCAGCTTCAGTGAAACGACAAGAAGTTCCTTCAGTAGATAAAAATAAACCATTATCA
TTGACAAAATCACCCATGAAATCACCATTTGCATCTCCAAATGGACTTAAAATCCCACCA
TTTATCGATCACGCACAGATGGCGGCTCAATTGCAATTACAGTCACAACTTCTTTGGCCT
CATCCGAGTTCTTTTCCTGGTCTTAGTGCACTCGACTTTGCACGATCCTCCTCGCAAAAT
AACACACCCTCCTTCTCGCCGAATGCAGCTGAAAATTTCTTTGCTCAGCAAATGCTACAA
AAATTCCAAGAAGACCAACAAAATCAACAACAGCAACAGTTTAAGCCACCAGTCAATGGT
GGTAGCAATAATGCAGGACAAAATAATAACATTAAACGAGATATTGAGAGCTTCTACGAT
CCAGTAAGTACAAATGGCTCATTTCTTGATGGCATTATACGATCATCGCTAGATAAAAAA
TCAGGCGAAATAAATCATGGTGCATTATTTGAGCAATTGTTGAAGAAAAATTCTTTACCA
GCTTCTTCATCTATTCCATCTGATAGTAGTGAGGATTTCAAAACAAACAATAAAAGACCA
GGCAGTCCAATGAATTATTCTCATATTATTAAAAAGGAGCGAACTAGTCCGCCTCCAAAT
CACAATAATGATTTAGGTTTTGCACTACATGATGAGCAGCAGCGTCAAACTTCTGCTTTA
GCAAAAAGTTTAGCGATAAAAGAAGAAGTAAATGGCTCATTACACAATAATGATGACGTT
AATTCATAA
>g3832.t1 Gene=g3832 Length=1042
MDTKDERLERVAEELMGRRKWKQYQESLTQTNTNDLIEKQSPSIEEETSNNKQQQQQQNS
ENNKTGIKAETLDIKEENKLMTTEDVSEKLESDYCKTTITDTSNREIEATEYKNSIKIET
TRPEPVDWKPDDNCNFCVNGKLLKVNEIGELVVETGPVHPESELNKHIVESDDSSSGSDT
VQKNNNQPQLQFQSSLIQKNLETLLKTVGLNPNMTSLESMAAQLAAFQRLQTPELNQLNP
FYPNLFYPFQQQQQISPTTTPDRSASPSVIIPSNDESPTGQVTGEQPLDLSAKPSGSTQL
ESKNIFKAKPRISTVPGRRSYTEEELNNALQDILSGKLGTRRAAVLYGIPRSTLRNKVYK
LATEQRRELLANHPPIAILEDEDEKDSGGEEEKDQPKVGDSNEQLQNYLKLLAKSSENLK
QDQHQESKDNRGPSSWPIDPTAWIQSLILANGFQGMGGFSSLLGNPSSTSPSSSLSPKQE
ELPEFLRKLLTQPQDNKSEFNNKLKNDIDPLMMMNLLQQNKKTPELDMNEGSEDSNAILK
IPSIPKAIFGQQPALVGTATHSKNGDIVHHSGSNTPSTSPQMAISPRLQVGSALANHLTM
RSPSSLMRQRSESESPEPRAKFNLQDVIRQSISKNFQTNILDDPKHSTPLTIDPMNDYQK
RPTISVIKSLGGTDLSRFGTNPNITQLQQQQLSPNNTGTGGKGTRPKRGKYRNYDRDSLV
EAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPQPLDGTSTSSSAAS
TAASVKRQEVPSVDKNKPLSLTKSPMKSPFASPNGLKIPPFIDHAQMAAQLQLQSQLLWP
HPSSFPGLSALDFARSSSQNNTPSFSPNAAENFFAQQMLQKFQEDQQNQQQQQFKPPVNG
GSNNAGQNNNIKRDIESFYDPVSTNGSFLDGIIRSSLDKKSGEINHGALFEQLLKKNSLP
ASSSIPSDSSEDFKTNNKRPGSPMNYSHIIKKERTSPPPNHNNDLGFALHDEQQRQTSAL
AKSLAIKEEVNGSLHNNDDVNS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 22 | g3832.t1 | Coils | Coil | Coil | 44 | 64 | - |
| 23 | g3832.t1 | Coils | Coil | Coil | 402 | 422 | - |
| 21 | g3832.t1 | Gene3D | G3DSA:1.10.10.60 | - | 321 | 363 | 1.8E-16 |
| 20 | g3832.t1 | Gene3D | G3DSA:1.10.10.60 | - | 714 | 755 | 3.5E-22 |
| 12 | g3832.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 69 | - |
| 13 | g3832.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 67 | - |
| 7 | g3832.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 285 | - |
| 11 | g3832.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 402 | - |
| 16 | g3832.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 601 | 621 | - |
| 10 | g3832.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 686 | 702 | - |
| 17 | g3832.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 686 | 711 | - |
| 15 | g3832.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 750 | 810 | - |
| 18 | g3832.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 750 | 767 | - |
| 9 | g3832.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 768 | 787 | - |
| 14 | g3832.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 795 | 809 | - |
| 8 | g3832.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 882 | 906 | - |
| 19 | g3832.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 960 | 983 | - |
| 3 | g3832.t1 | PANTHER | PTHR21545 | TRANSCRIPTION FACTOR MLR1/2 | 8 | 921 | 4.1E-95 |
| 4 | g3832.t1 | PANTHER | PTHR21545:SF13 | ECDYSONE-INDUCED PROTEIN 93F, ISOFORM C | 8 | 921 | 4.1E-95 |
| 2 | g3832.t1 | Pfam | PF05225 | helix-turn-helix, Psq domain | 322 | 364 | 1.0E-12 |
| 1 | g3832.t1 | Pfam | PF05225 | helix-turn-helix, Psq domain | 716 | 757 | 9.6E-15 |
| 25 | g3832.t1 | ProSiteProfiles | PS50960 | Psq-type HTH domain profile. | 312 | 364 | 15.547 |
| 24 | g3832.t1 | ProSiteProfiles | PS50960 | Psq-type HTH domain profile. | 705 | 757 | 21.221 |
| 6 | g3832.t1 | SUPERFAMILY | SSF46689 | Homeodomain-like | 317 | 363 | 6.63E-10 |
| 5 | g3832.t1 | SUPERFAMILY | SSF46689 | Homeodomain-like | 709 | 763 | 3.23E-11 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003677 | DNA binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
