General information for g3832.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Mushroom body large-type Kenyon cell-specific protein 1.
Parent gene
- The parent gene g3832 is located on chr_3: 28267325..28277014 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3832 | g3832.t2 | isoform | g3832.t2 | 28263227 | 28277014 |
| chr_3 | g3832 | g3832.t2 | exon | g3832.t2.exon1 | 28263227 | 28263320 |
| chr_3 | g3832 | g3832.t2 | cds | g3832.t2.CDS1 | 28263227 | 28263320 |
| chr_3 | g3832 | g3832.t2 | exon | g3832.t2.exon2 | 28271824 | 28271937 |
| chr_3 | g3832 | g3832.t2 | cds | g3832.t2.CDS2 | 28271824 | 28271937 |
| chr_3 | g3832 | g3832.t2 | exon | g3832.t2.exon3 | 28272159 | 28272296 |
| chr_3 | g3832 | g3832.t2 | cds | g3832.t2.CDS3 | 28272159 | 28272296 |
| chr_3 | g3832 | g3832.t2 | exon | g3832.t2.exon4 | 28272358 | 28272587 |
| chr_3 | g3832 | g3832.t2 | cds | g3832.t2.CDS4 | 28272358 | 28272587 |
| chr_3 | g3832 | g3832.t2 | exon | g3832.t2.exon5 | 28272662 | 28272890 |
| chr_3 | g3832 | g3832.t2 | cds | g3832.t2.CDS5 | 28272662 | 28272890 |
| chr_3 | g3832 | g3832.t2 | exon | g3832.t2.exon6 | 28272950 | 28273139 |
| chr_3 | g3832 | g3832.t2 | cds | g3832.t2.CDS6 | 28272950 | 28273139 |
| chr_3 | g3832 | g3832.t2 | exon | g3832.t2.exon7 | 28274806 | 28277014 |
| chr_3 | g3832 | g3832.t2 | cds | g3832.t2.CDS7 | 28274806 | 28277014 |
| chr_3 | g3832 | g3832.t2 | TSS | g3832.t2 | NA | NA |
| chr_3 | g3832 | g3832.t2 | TTS | g3832.t2 | NA | NA |
Sequences
>g3832.t2 Gene=g3832 Length=3204
ATGGCGGATTGTTCATATCTTCGTTGTGTACAAGAGCGAAGATTTATAAAACGCGAATTA
CAAAAGTGGTACAAGAATATGGTCTACATAGTTGGATTAGAAAGAGTAGCTGAGGAATTG
ATGGGACGCAGAAAATGGAAACAATATCAAGAGTCTTTAACACAAACAAACACGAATGAT
TTGATTGAGAAGCAATCACCTTCAATTGAAGAAGAAACCAGTAATAACAAGCAGCAGCAG
CAGCAACAAAACAGTGAAAATAATAAAACTGGAATTAAAGCGGAAACACTAGATATAAAG
GAAGAAAACAAATTGATGACTACAGAAGACGTTAGCGAAAAATTAGAATCAGATTATTGT
AAAACAACAATAACAGACACATCAAATAGAGAGATAGAAGCGACTGAATACAAGAACTCG
ATCAAAATCGAGACAACGCGACCTGAGCCGGTCGATTGGAAACCCGACGACAATTGTAAC
TTTTGTGTCAACGGAAAACTGTTAAAAGTGAACGAAATAGGTGAATTAGTCGTTGAGACG
GGTCCGGTGCATCCGGAATCTGAGCTCAACAAGCATATTGTTGAATCAGACGACTCGAGT
TCAGGTTCCGATACAGTGCAAAAAAATAATAATCAACCACAACTTCAATTTCAATCATCG
CTGATACAGAAAAATTTAGAGACACTGTTAAAGACAGTTGGTCTTAATCCAAATATGACG
TCATTAGAATCAATGGCTGCACAACTTGCAGCATTTCAACGTCTACAAACACCAGAATTA
AATCAATTAAATCCATTTTATCCGAATCTATTTTATCCATTTCAACAACAACAACAAATA
TCACCAACTACAACGCCTGATCGTTCAGCAAGTCCTTCAGTTATTATACCGTCAAATGAT
GAATCACCGACTGGTCAAGTGACTGGTGAACAACCTTTAGATCTCAGTGCAAAACCAAGT
GGATCTACACAACTTGAGTCAAAAAATATTTTCAAAGCAAAACCACGAATATCGACTGTG
CCTGGTCGACGATCCTATACAGAAGAAGAATTGAATAATGCACTGCAAGACATTTTAAGT
GGAAAATTGGGAACAAGACGAGCTGCTGTTCTTTATGGTATTCCGAGATCTACATTACGT
AATAAAGTTTATAAACTGGCCACTGAACAAAGACGTGAATTGTTGGCCAATCATCCACCA
ATAGCGATTCTTGAGGATGAAGATGAAAAAGATTCGGGTGGTGAGGAGGAAAAAGATCAA
CCAAAAGTGGGTGATTCAAATGAGCAGTTACAAAATTATTTGAAATTATTAGCTAAAAGT
TCAGAGAACTTGAAACAAGATCAACATCAAGAGTCAAAAGATAATCGAGGTCCGAGTTCA
TGGCCCATTGATCCAACCGCGTGGATACAAAGTCTTATTCTTGCCAATGGATTTCAGGGA
ATGGGCGGATTTTCATCACTTTTAGGCAATCCATCGTCTACGTCACCTTCGTCATCGCTC
TCTCCCAAGCAAGAAGAGCTACCCGAGTTTCTGAGAAAATTGTTGACACAGCCGCAAGAT
AACAAGTCTGAGTTTAATAATAAACTTAAAAACGACATTGACCCACTGATGATGATGAAT
TTACTACAACAAAATAAAAAAACACCCGAGCTTGATATGAATGAAGGTAGCGAAGATTCT
AATGCGATTCTTAAAATTCCGTCCATTCCGAAAGCGATATTTGGTCAGCAGCCAGCACTT
GTAGGAACAGCGACACACAGCAAGAATGGTGACATTGTTCATCATTCGGGTTCAAATACT
CCTTCCACGTCACCACAAATGGCCATTAGTCCACGTTTACAAGTTGGTTCAGCACTTGCA
AATCATCTAACTATGCGATCACCGTCATCATTAATGCGACAAAGAAGTGAATCAGAATCA
CCAGAACCACGAGCGAAATTTAATCTTCAAGATGTCATTCGTCAAAGTATTAGTAAAAAC
TTTCAAACAAATATTTTGGACGACCCAAAACATTCCACGCCACTTACAATTGATCCAATG
AATGATTATCAAAAACGACCGACAATTTCGGTTATTAAAAGTCTTGGTGGCACTGATCTT
TCACGTTTTGGAACAAATCCCAATATCACACAATTACAGCAACAACAATTGTCACCAAAT
AATACTGGAACTGGTGGAAAAGGTACAAGGCCGAAACGTGGAAAATATCGTAATTATGAT
CGCGATAGTCTAGTAGAAGCTGTAAAAGCAGTACAACGTGGTGAAATGTCAGTTCATAGA
GCTGGAAGTTATTATGGTGTTCCACATTCCACACTTGAATATAAAGTAAAAGAACGACAT
TTGATGCGTCCAAGAAAACGTGAACCTAAGCCACAACCACTGGATGGAACTTCGACATCA
TCATCAGCAGCCTCAACTGCAGCTTCAGTGAAACGACAAGAAGTTCCTTCAGTAGATAAA
AATAAACCATTATCATTGACAAAATCACCCATGAAATCACCATTTGCATCTCCAAATGGA
CTTAAAATCCCACCATTTATCGATCACGCACAGATGGCGGCTCAATTGCAATTACAGTCA
CAACTTCTTTGGCCTCATCCGAGTTCTTTTCCTGGTCTTAGTGCACTCGACTTTGCACGA
TCCTCCTCGCAAAATAACACACCCTCCTTCTCGCCGAATGCAGCTGAAAATTTCTTTGCT
CAGCAAATGCTACAAAAATTCCAAGAAGACCAACAAAATCAACAACAGCAACAGTTTAAG
CCACCAGTCAATGGTGGTAGCAATAATGCAGGACAAAATAATAACATTAAACGAGATATT
GAGAGCTTCTACGATCCAGTAAGTACAAATGGCTCATTTCTTGATGGCATTATACGATCA
TCGCTAGATAAAAAATCAGGCGAAATAAATCATGGTGCATTATTTGAGCAATTGTTGAAG
AAAAATTCTTTACCAGCTTCTTCATCTATTCCATCTGATAGTAGTGAGGATTTCAAAACA
AACAATAAAAGACCAGGCAGTCCAATGAATTATTCTCATATTATTAAAAAGGAGCGAACT
AGTCCGCCTCCAAATCACAATAATGATTTAGGTTTTGCACTACATGATGAGCAGCAGCGT
CAAACTTCTGCTTTAGCAAAAAGTTTAGCGATAAAAGAAGAAGTAAATGGCTCATTACAC
AATAATGATGACGTTAATTCATAA
>g3832.t2 Gene=g3832 Length=1067
MADCSYLRCVQERRFIKRELQKWYKNMVYIVGLERVAEELMGRRKWKQYQESLTQTNTND
LIEKQSPSIEEETSNNKQQQQQQNSENNKTGIKAETLDIKEENKLMTTEDVSEKLESDYC
KTTITDTSNREIEATEYKNSIKIETTRPEPVDWKPDDNCNFCVNGKLLKVNEIGELVVET
GPVHPESELNKHIVESDDSSSGSDTVQKNNNQPQLQFQSSLIQKNLETLLKTVGLNPNMT
SLESMAAQLAAFQRLQTPELNQLNPFYPNLFYPFQQQQQISPTTTPDRSASPSVIIPSND
ESPTGQVTGEQPLDLSAKPSGSTQLESKNIFKAKPRISTVPGRRSYTEEELNNALQDILS
GKLGTRRAAVLYGIPRSTLRNKVYKLATEQRRELLANHPPIAILEDEDEKDSGGEEEKDQ
PKVGDSNEQLQNYLKLLAKSSENLKQDQHQESKDNRGPSSWPIDPTAWIQSLILANGFQG
MGGFSSLLGNPSSTSPSSSLSPKQEELPEFLRKLLTQPQDNKSEFNNKLKNDIDPLMMMN
LLQQNKKTPELDMNEGSEDSNAILKIPSIPKAIFGQQPALVGTATHSKNGDIVHHSGSNT
PSTSPQMAISPRLQVGSALANHLTMRSPSSLMRQRSESESPEPRAKFNLQDVIRQSISKN
FQTNILDDPKHSTPLTIDPMNDYQKRPTISVIKSLGGTDLSRFGTNPNITQLQQQQLSPN
NTGTGGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERH
LMRPRKREPKPQPLDGTSTSSSAASTAASVKRQEVPSVDKNKPLSLTKSPMKSPFASPNG
LKIPPFIDHAQMAAQLQLQSQLLWPHPSSFPGLSALDFARSSSQNNTPSFSPNAAENFFA
QQMLQKFQEDQQNQQQQQFKPPVNGGSNNAGQNNNIKRDIESFYDPVSTNGSFLDGIIRS
SLDKKSGEINHGALFEQLLKKNSLPASSSIPSDSSEDFKTNNKRPGSPMNYSHIIKKERT
SPPPNHNNDLGFALHDEQQRQTSALAKSLAIKEEVNGSLHNNDDVNS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 22 | g3832.t2 | Coils | Coil | Coil | 69 | 89 | - |
| 23 | g3832.t2 | Coils | Coil | Coil | 427 | 447 | - |
| 21 | g3832.t2 | Gene3D | G3DSA:1.10.10.60 | - | 346 | 388 | 1.9E-16 |
| 20 | g3832.t2 | Gene3D | G3DSA:1.10.10.60 | - | 739 | 780 | 3.6E-22 |
| 9 | g3832.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 92 | - |
| 16 | g3832.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 95 | - |
| 8 | g3832.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 309 | - |
| 17 | g3832.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 427 | - |
| 14 | g3832.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 646 | - |
| 15 | g3832.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 727 | - |
| 18 | g3832.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 737 | - |
| 7 | g3832.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 775 | 835 | - |
| 13 | g3832.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 775 | 792 | - |
| 11 | g3832.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 793 | 812 | - |
| 10 | g3832.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 820 | 834 | - |
| 12 | g3832.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 907 | 931 | - |
| 19 | g3832.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 985 | 1008 | - |
| 3 | g3832.t2 | PANTHER | PTHR21545 | TRANSCRIPTION FACTOR MLR1/2 | 1 | 946 | 1.6E-107 |
| 4 | g3832.t2 | PANTHER | PTHR21545:SF13 | ECDYSONE-INDUCED PROTEIN 93F, ISOFORM C | 1 | 946 | 1.6E-107 |
| 2 | g3832.t2 | Pfam | PF05225 | helix-turn-helix, Psq domain | 347 | 389 | 1.0E-12 |
| 1 | g3832.t2 | Pfam | PF05225 | helix-turn-helix, Psq domain | 741 | 782 | 9.8E-15 |
| 24 | g3832.t2 | ProSiteProfiles | PS50960 | Psq-type HTH domain profile. | 337 | 389 | 15.547 |
| 25 | g3832.t2 | ProSiteProfiles | PS50960 | Psq-type HTH domain profile. | 730 | 782 | 21.221 |
| 6 | g3832.t2 | SUPERFAMILY | SSF46689 | Homeodomain-like | 342 | 388 | 6.81E-10 |
| 5 | g3832.t2 | SUPERFAMILY | SSF46689 | Homeodomain-like | 734 | 788 | 3.23E-11 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003677 | DNA binding | MF |
KEGG
Orthology
- This transcript has been annotated with K20015 (ecdysone-induced protein 93F, isoform B)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
