General information for g384.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Longitudinals lacking protein, isoform G.
Parent gene
- The parent gene g384 is located on chr_3: 3110157..3117504 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g384 | g384.t12 | isoform | g384.t12 | 3110157 | 3117376 |
| chr_3 | g384 | g384.t12 | exon | g384.t12.exon1 | 3110157 | 3110412 |
| chr_3 | g384 | g384.t12 | cds | g384.t12.CDS1 | 3110158 | 3110412 |
| chr_3 | g384 | g384.t12 | exon | g384.t12.exon2 | 3110485 | 3110782 |
| chr_3 | g384 | g384.t12 | cds | g384.t12.CDS2 | 3110485 | 3110658 |
| chr_3 | g384 | g384.t12 | exon | g384.t12.exon3 | 3117362 | 3117376 |
| chr_3 | g384 | g384.t12 | TSS | g384.t12 | 3117507 | 3117507 |
| chr_3 | g384 | g384.t12 | TTS | g384.t12 | NA | NA |
Sequences
>g384.t12 Gene=g384 Length=569
ACTGTGCTAATTACGCAGATTCAACCTGAAAAGTGAACGAAGAGAGAATTCAACTATCAC
AAGAGCAGAACACAGAATAAAATAAATTTTTCCGTTATAACTCAAGCGACTCAAAACTTA
GGATCATCCCGCCTTCATCATGGATGATGATCAACAATTTTGTCTCCGATGGAATAATCA
TCAAAGTACACTGATATCGGTATTTGACACTTTATTGGAAAGTAATACGCTCGTCGATTG
CACATTGGCGGCGGAAGGAAAATTTTTGAAAGCACATAAAGTCGTCTTATCAGCATGTAG
TCCATATTTTGCTACTTTGTTGTCACAACAGTATGATAAGCATCCAATTTTCATTCTAAA
GGATGTGAAATTTCAAGAATTGCGTGCCATGATGGACTACATGTATCGTGGAGAAGTAAA
CATTTCTCAAGATCAGTTGGCAGCTTTACTTAAGGCAGCCGAGTCTTTACAAATTAAAGG
TCTCTCTGACAGCCGTGGAGGTAGCAGCAACAACAATTCCACTAATGCGCCATCTCAAGC
ACATAAGAGTGATGCAAAATCACATGTAC
>g384.t12 Gene=g384 Length=143
MDDDQQFCLRWNNHQSTLISVFDTLLESNTLVDCTLAAEGKFLKAHKVVLSACSPYFATL
LSQQYDKHPIFILKDVKFQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDSRG
GSSNNNSTNAPSQAHKSDAKSHV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g384.t12 | CDD | cd18315 | BTB_POZ_BAB-like | 31 | 114 | 1.37983E-40 |
| 5 | g384.t12 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 8 | 143 | 7.1E-35 |
| 8 | g384.t12 | MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 143 | - |
| 9 | g384.t12 | MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 136 | - |
| 2 | g384.t12 | PANTHER | PTHR23110:SF78 | LONGITUDINALS LACKING PROTEIN, ISOFORMS F/I/K/T | 1 | 130 | 9.4E-90 |
| 3 | g384.t12 | PANTHER | PTHR23110 | BTB DOMAIN TRANSCRIPTION FACTOR | 1 | 130 | 9.4E-90 |
| 1 | g384.t12 | Pfam | PF00651 | BTB/POZ domain | 22 | 117 | 1.9E-26 |
| 10 | g384.t12 | ProSiteProfiles | PS50097 | BTB domain profile. | 32 | 97 | 21.181 |
| 7 | g384.t12 | SMART | SM00225 | BTB_4 | 32 | 127 | 2.8E-23 |
| 4 | g384.t12 | SUPERFAMILY | SSF54695 | POZ domain | 7 | 116 | 1.2E-30 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed