General information for g384.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Longitudinals lacking protein, isoforms A/B/D/L.
Parent gene
- The parent gene g384 is located on chr_3: 3110157..3117504 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g384 | g384.t2 | TTS | g384.t2 | 3101929 | 3101929 |
| chr_3 | g384 | g384.t2 | isoform | g384.t2 | 3102385 | 3117504 |
| chr_3 | g384 | g384.t2 | exon | g384.t2.exon1 | 3102385 | 3102525 |
| chr_3 | g384 | g384.t2 | cds | g384.t2.CDS1 | 3102386 | 3102525 |
| chr_3 | g384 | g384.t2 | exon | g384.t2.exon2 | 3109230 | 3109289 |
| chr_3 | g384 | g384.t2 | cds | g384.t2.CDS2 | 3109230 | 3109289 |
| chr_3 | g384 | g384.t2 | exon | g384.t2.exon3 | 3109357 | 3109719 |
| chr_3 | g384 | g384.t2 | cds | g384.t2.CDS3 | 3109357 | 3109719 |
| chr_3 | g384 | g384.t2 | exon | g384.t2.exon4 | 3109800 | 3109959 |
| chr_3 | g384 | g384.t2 | cds | g384.t2.CDS4 | 3109800 | 3109959 |
| chr_3 | g384 | g384.t2 | exon | g384.t2.exon5 | 3110143 | 3110412 |
| chr_3 | g384 | g384.t2 | cds | g384.t2.CDS5 | 3110143 | 3110412 |
| chr_3 | g384 | g384.t2 | exon | g384.t2.exon6 | 3110485 | 3110779 |
| chr_3 | g384 | g384.t2 | cds | g384.t2.CDS6 | 3110485 | 3110658 |
| chr_3 | g384 | g384.t2 | exon | g384.t2.exon7 | 3117362 | 3117504 |
| chr_3 | g384 | g384.t2 | TSS | g384.t2 | 3117507 | 3117507 |
Sequences
>g384.t2 Gene=g384 Length=1432
TGAGTTAAATTAGTTGAGGAGTAAAGACGCGTTTTTTGTGTGCTCGTATAAAAAAGACGC
CATTTTGAAAAAAATAATATTTAAAACCACGGAAAAATCAAGTATTAGATTTGTGATATT
AAATGAAGACTGTGCTAATTACGATTCAACCTGAAAAGTGAACGAAGAGAGAATTCAACT
ATCACAAGAGCAGAACACAGAATAAAATAAATTTTTCCGTTATAACTCAAGCGACTCAAA
ACTTAGGATCATCCCGCCTTCATCATGGATGATGATCAACAATTTTGTCTCCGATGGAAT
AATCATCAAAGTACACTGATATCGGTATTTGACACTTTATTGGAAAGTAATACGCTCGTC
GATTGCACATTGGCGGCGGAAGGAAAATTTTTGAAAGCACATAAAGTCGTCTTATCAGCA
TGTAGTCCATATTTTGCTACTTTGTTGTCACAACAGTATGATAAGCATCCAATTTTCATT
CTAAAGGATGTGAAATTTCAAGAATTGCGTGCCATGATGGACTACATGTATCGTGGAGAA
GTAAACATTTCTCAAGATCAGTTGGCAGCTTTACTTAAGGCAGCCGAGTCTTTACAAATT
AAAGGTCTCTCTGACAGCCGTGGAGGTAGCAGCAACAACAATTCCACTAATGCGCCATCT
CAAGCACATAAGAGTGATGCAAAATCACATGTACCTGCACCACCAAAGGCTTCAGGCTTA
ACAATAGAAAACAAAAGACCATTGCTGAGAACAGATTTTGATGCGGACATATCTGGCTCT
CGAGAAGGCTCCGTCTCACCATCGACACGAAAGCGTAAAAAAGTGAATCAGCGTCGTAAG
AGCTTAATCGAAGCAAATAATTTACTAGATAATCATGACCAGCACTCAAATTCCTCATCA
CATTCTAATAATCAGCAACAGTTATCAACCTCCGCTACCTCTGCACCTATAAACAACTTG
TCCGTTACCAATACAAAAAAGACTGATCAAGACGGAAATAATCAGGAGCACGATCATGGT
GATGACGAGAATGCACAGCCACAAAAGCGTTCAAAACATGATGATACGGACAATAAGCAA
GATTCGGAGTTGATGCTGGAACCGAAAAATGAATATGATGACGATGATGATGACGAAAAT
GATGATAATGTTGAAGATTTGACAATGGATGATGAAATGTTGGAAGATTTAGAAGCAGGG
CCGAGTCACGGTGGTGAGGGATCTAGTCAAGGATATCATTGGCAAAATCAGGAAGGACAG
GAATCATCTGGACAGCACAGAGACGCACAAGATCATTATGTCGAATCAAATGAAAAGAAT
TTTGTTTGTGCTTTATGTTTACGTCGATATAGCAAGCTATCATGTCTAAAGCGACACATT
CGTTATGAGGTTATACAAGAATTAAATTTTTTAAATATTTTTATATGCTAAA
>g384.t2 Gene=g384 Length=388
MDDDQQFCLRWNNHQSTLISVFDTLLESNTLVDCTLAAEGKFLKAHKVVLSACSPYFATL
LSQQYDKHPIFILKDVKFQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDSRG
GSSNNNSTNAPSQAHKSDAKSHVPAPPKASGLTIENKRPLLRTDFDADISGSREGSVSPS
TRKRKKVNQRRKSLIEANNLLDNHDQHSNSSSHSNNQQQLSTSATSAPINNLSVTNTKKT
DQDGNNQEHDHGDDENAQPQKRSKHDDTDNKQDSELMLEPKNEYDDDDDDENDDNVEDLT
MDDEMLEDLEAGPSHGGEGSSQGYHWQNQEGQESSGQHRDAQDHYVESNEKNFVCALCLR
RYSKLSCLKRHIRYEVIQELNFLNIFIC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g384.t2 | CDD | cd18315 | BTB_POZ_BAB-like | 31 | 114 | 1.60292E-39 |
| 5 | g384.t2 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 8 | 156 | 5.7E-34 |
| 11 | g384.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 190 | - |
| 14 | g384.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 136 | - |
| 9 | g384.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 241 | - |
| 12 | g384.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 291 | - |
| 13 | g384.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 279 | - |
| 10 | g384.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 344 | - |
| 8 | g384.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 335 | - |
| 2 | g384.t2 | PANTHER | PTHR23110:SF78 | LONGITUDINALS LACKING PROTEIN, ISOFORMS F/I/K/T | 1 | 351 | 1.2E-98 |
| 3 | g384.t2 | PANTHER | PTHR23110 | BTB DOMAIN TRANSCRIPTION FACTOR | 1 | 351 | 1.2E-98 |
| 1 | g384.t2 | Pfam | PF00651 | BTB/POZ domain | 22 | 117 | 2.0E-25 |
| 15 | g384.t2 | ProSiteProfiles | PS50097 | BTB domain profile. | 32 | 97 | 21.181 |
| 7 | g384.t2 | SMART | SM00225 | BTB_4 | 32 | 127 | 2.8E-23 |
| 4 | g384.t2 | SUPERFAMILY | SSF54695 | POZ domain | 7 | 116 | 1.62E-29 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
