General information for g384.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g384 is located on chr_3: 3110157..3117504 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g384 | g384.t9 | isoform | g384.t9 | 3109702 | 3117504 |
| chr_3 | g384 | g384.t9 | exon | g384.t9.exon1 | 3109702 | 3109719 |
| chr_3 | g384 | g384.t9 | cds | g384.t9.CDS1 | 3109703 | 3109719 |
| chr_3 | g384 | g384.t9 | exon | g384.t9.exon2 | 3109800 | 3109959 |
| chr_3 | g384 | g384.t9 | cds | g384.t9.CDS2 | 3109800 | 3109959 |
| chr_3 | g384 | g384.t9 | exon | g384.t9.exon3 | 3110143 | 3110412 |
| chr_3 | g384 | g384.t9 | cds | g384.t9.CDS3 | 3110143 | 3110337 |
| chr_3 | g384 | g384.t9 | exon | g384.t9.exon4 | 3110485 | 3110560 |
| chr_3 | g384 | g384.t9 | exon | g384.t9.exon5 | 3110613 | 3110779 |
| chr_3 | g384 | g384.t9 | exon | g384.t9.exon6 | 3117362 | 3117504 |
| chr_3 | g384 | g384.t9 | TSS | g384.t9 | 3117507 | 3117507 |
| chr_3 | g384 | g384.t9 | TTS | g384.t9 | NA | NA |
Sequences
>g384.t9 Gene=g384 Length=834
TGAGTTAAATTAGTTGAGGAGTAAAGACGCGTTTTTTGTGTGCTCGTATAAAAAAGACGC
CATTTTGAAAAAAATAATATTTAAAACCACGGAAAAATCAAGTATTAGATTTGTGATATT
AAATGAAGACTGTGCTAATTACGATTCAACCTGAAAAGTGAACGAAGAGAGAATTCAACT
ATCACAAGAGCAGAACACAGAATAAAATAAATTTTTCCGTTATAACTCAAGCGACTCAAA
ACTTAGGATCATCCCGCCTTCATCATGGATGATGATCAACAATTTTGTCTCCGATGGAAT
AATCATCAAATTGCACATTGGCGGCGGAAGGAAAATTTTTGAAAGCACATAAAGTCGTCT
TATCAGCATGTAGTCCATATTTTGCTACTTTGTTGTCACAACAGTATGATAAGCATCCAA
TTTTCATTCTAAAGGATGTGAAATTTCAAGAATTGCGTGCCATGATGGACTACATGTATC
GTGGAGAAGTAAACATTTCTCAAGATCAGTTGGCAGCTTTACTTAAGGCAGCCGAGTCTT
TACAAATTAAAGGTCTCTCTGACAGCCGTGGAGGTAGCAGCAACAACAATTCCACTAATG
CGCCATCTCAAGCACATAAGAGTGATGCAAAATCACATGTACCTGCACCACCAAAGGCTT
CAGGCTTAACAATAGAAAACAAAAGACCATTGCTGAGAACAGATTTTGATGCGGACATAT
CTGGCTCTCGAGAAGGCTCCGTCTCACCATCGACACGAAAGCGTAAAAAAGTGAATCAGC
GTCGTAAGAGCTTAATCGAAGCAAATAATTTACTAGATAATCATGACCAGCACT
>g384.t9 Gene=g384 Length=124
MMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDSRGGSSNNNSTNAPSQAHKSDAKSHV
PAPPKASGLTIENKRPLLRTDFDADISGSREGSVSPSTRKRKKVNQRRKSLIEANNLLDN
HDQH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g384.t9 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 74 | 5.8E-9 |
| 5 | g384.t9 | MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 124 | - |
| 6 | g384.t9 | MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 53 | - |
| 2 | g384.t9 | PANTHER | PTHR23110:SF78 | LONGITUDINALS LACKING PROTEIN, ISOFORMS F/I/K/T | 1 | 124 | 1.1E-25 |
| 3 | g384.t9 | PANTHER | PTHR23110 | BTB DOMAIN TRANSCRIPTION FACTOR | 1 | 124 | 1.1E-25 |
| 1 | g384.t9 | Pfam | PF00651 | BTB/POZ domain | 1 | 34 | 3.3E-5 |
| 4 | g384.t9 | SUPERFAMILY | SSF54695 | POZ domain | 1 | 34 | 7.85E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed