General information for g3847.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UDP-N-acetylglucosamine–dolichyl-phosphate N-acetylglucosaminephosphotransferase.
Parent gene
- The parent gene g3847 is located on chr_3: 28350080..28358891 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3847 | g3847.t1 | TSS | g3847.t1 | 28345844 | 28345844 |
| chr_3 | g3847 | g3847.t1 | isoform | g3847.t1 | 28346246 | 28350080 |
| chr_3 | g3847 | g3847.t1 | exon | g3847.t1.exon1 | 28346246 | 28346304 |
| chr_3 | g3847 | g3847.t1 | cds | g3847.t1.CDS1 | 28346246 | 28346304 |
| chr_3 | g3847 | g3847.t1 | exon | g3847.t1.exon2 | 28346366 | 28346938 |
| chr_3 | g3847 | g3847.t1 | cds | g3847.t1.CDS2 | 28346366 | 28346938 |
| chr_3 | g3847 | g3847.t1 | exon | g3847.t1.exon3 | 28349579 | 28350080 |
| chr_3 | g3847 | g3847.t1 | cds | g3847.t1.CDS3 | 28349579 | 28350080 |
| chr_3 | g3847 | g3847.t1 | TTS | g3847.t1 | 28350108 | 28350108 |
Sequences
>g3847.t1 Gene=g3847 Length=1134
ATGTTTCTAAAAGCTGGAATCTCTGGAATTGACATGAACAAAAGAAACAAAAACAAAATT
CCTGAAGCATTTGGTGTGGTAACTGGTTGTGTGTTCTTAATCGCACTATTTTGCTTTATT
CCAATACCATTTGGTCATATATTTTTTGAGGGAAAAACTGATGTGAACTTTCCACATCAT
GAATTTGTGGAATTAATTGCAGCTCTGTTATCAATTTGTTGTATGATTTTACTTGGTTTT
GCTGATGATGTACTTGATCTACGATGGCGTCATAAATTATTATTACCAACTATTGCCTCA
TTACCTCTCTTAATTGTATATTATGTGAATTTCAATTCAACAACTATAATTTTACCAAAG
ATAGTTCATAACATTATATCGAAATCAATCGATATTGGATTTCTCTATTACATTTATATG
GGAATGCTTGCAGTTTTCTGCACAAATGCTATCAATATTTTAGCAGGAATAAATGGATTA
GAAGTGGGTCAATCTATCATCATCTCAAGCTGTGTCATCATTTTTAACATGATTCAAATT
ATCAATGACTCGGTTGCAGAGAAACATCAACTCTCATTATATATTATGCTTCCTTACTTG
GCTACAACTTTAGCTTTGTGGAAATTTAACAAATACCCTTCACAAGTGTTTGTAGGTGAC
ACGTTCAACTATTTATCTGGAATGACATTTGCTGTGGTTGGCATCTTAGGACACTTTAGC
AAAACAATTTTACTCTTTTTCATACCACAAATATTGAATTTCTTATATTCAGTGCCACAA
CTTTTTCATTTTATTCCATGTCCTCGTCATCGACTTCCTAAATTTGATCCCGAGACTGGT
CTTTTAAACTACAGCAAAACAACTTTTAAAGAAAATGAATTGAATTCTTTGGGACGTTTA
ATATTTGTTATACTTAAAACACTGAAATTGATAAAGTGGGAAAAGAACGAAGACGACGGT
ATAATTATATGCAACAATCTTACAATCATCAATTTCTTTATCCTATTTACTGGACCAATT
CATGAAGAAAAATTGAACAACTATATTCTTGTTTTTCAAATTATTTGTTCATGTTTTGCA
TTTCTAATTCGATATCCATTGGCGCAATATTTTTATAGTGACAATCTGTCATAG
>g3847.t1 Gene=g3847 Length=377
MFLKAGISGIDMNKRNKNKIPEAFGVVTGCVFLIALFCFIPIPFGHIFFEGKTDVNFPHH
EFVELIAALLSICCMILLGFADDVLDLRWRHKLLLPTIASLPLLIVYYVNFNSTTIILPK
IVHNIISKSIDIGFLYYIYMGMLAVFCTNAINILAGINGLEVGQSIIISSCVIIFNMIQI
INDSVAEKHQLSLYIMLPYLATTLALWKFNKYPSQVFVGDTFNYLSGMTFAVVGILGHFS
KTILLFFIPQILNFLYSVPQLFHFIPCPRHRLPKFDPETGLLNYSKTTFKENELNSLGRL
IFVILKTLKLIKWEKNEDDGIIICNNLTIINFFILFTGPIHEEKLNNYILVFQIICSCFA
FLIRYPLAQYFYSDNLS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 35 | g3847.t1 | CDD | cd06855 | GT_GPT_euk | 1 | 285 | 1.04858E-135 |
| 2 | g3847.t1 | PANTHER | PTHR10571:SF0 | UDP-N-ACETYLGLUCOSAMINE–DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE | 2 | 372 | 1.7E-143 |
| 3 | g3847.t1 | PANTHER | PTHR10571 | UDP-N-ACETYLGLUCOSAMINE–DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE | 2 | 372 | 1.7E-143 |
| 1 | g3847.t1 | Pfam | PF00953 | Glycosyl transferase family 4 | 66 | 237 | 5.4E-37 |
| 17 | g3847.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 19 | - |
| 30 | g3847.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 42 | - |
| 20 | g3847.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 43 | 61 | - |
| 34 | g3847.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 62 | 81 | - |
| 16 | g3847.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 82 | 92 | - |
| 29 | g3847.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 93 | 110 | - |
| 23 | g3847.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 111 | 133 | - |
| 27 | g3847.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 134 | 155 | - |
| 14 | g3847.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 156 | 161 | - |
| 33 | g3847.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 162 | 181 | - |
| 22 | g3847.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 182 | 192 | - |
| 26 | g3847.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 193 | 209 | - |
| 19 | g3847.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 210 | 220 | - |
| 28 | g3847.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 221 | 239 | - |
| 24 | g3847.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 240 | 244 | - |
| 31 | g3847.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 245 | 265 | - |
| 15 | g3847.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 266 | 319 | - |
| 25 | g3847.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 320 | 341 | - |
| 21 | g3847.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 342 | 346 | - |
| 32 | g3847.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 347 | 367 | - |
| 18 | g3847.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 368 | 377 | - |
| 10 | g3847.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 42 | - |
| 13 | g3847.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 62 | 81 | - |
| 12 | g3847.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 93 | 112 | - |
| 4 | g3847.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 132 | 154 | - |
| 8 | g3847.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 159 | 181 | - |
| 7 | g3847.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 191 | 210 | - |
| 11 | g3847.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 222 | 239 | - |
| 5 | g3847.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 243 | 265 | - |
| 9 | g3847.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 321 | 340 | - |
| 6 | g3847.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 350 | 372 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
## Warning: Removed 1 row(s) containing missing values (geom_path).
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003975 | UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0006487 | protein N-linked glycosylation | BP |
| GO:0006488 | dolichol-linked oligosaccharide biosynthetic process | BP |
| GO:0008963 | phospho-N-acetylmuramoyl-pentapeptide-transferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K01001 (UDP-N-acetylglucosamine–dolichyl-phosphate N-acetylglucosaminephosphotransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
