Gene loci information

Transcript annotation

  • This transcript has been annotated as UDP-N-acetylglucosamine–dolichyl-phosphate N-acetylglucosaminephosphotransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3847 g3847.t10 isoform g3847.t10 28345829 28350080
chr_3 g3847 g3847.t10 exon g3847.t10.exon1 28345829 28345988
chr_3 g3847 g3847.t10 TSS g3847.t10 28345844 28345844
chr_3 g3847 g3847.t10 exon g3847.t10.exon2 28346067 28346304
chr_3 g3847 g3847.t10 cds g3847.t10.CDS1 28346162 28346304
chr_3 g3847 g3847.t10 exon g3847.t10.exon3 28346366 28346394
chr_3 g3847 g3847.t10 cds g3847.t10.CDS2 28346366 28346394
chr_3 g3847 g3847.t10 exon g3847.t10.exon4 28346770 28346938
chr_3 g3847 g3847.t10 cds g3847.t10.CDS3 28346770 28346938
chr_3 g3847 g3847.t10 exon g3847.t10.exon5 28349579 28350080
chr_3 g3847 g3847.t10 cds g3847.t10.CDS4 28349579 28350080
chr_3 g3847 g3847.t10 TTS g3847.t10 28350108 28350108

Sequences

>g3847.t10 Gene=g3847 Length=1098
AGTAATAGCAAGACAGTTTAGAGCCACCACTCGAGTAATTTTGATACTTTTTCATAAATA
ATCTTTCTTATAAAAATTCTATTAAGAAAATAAAAATAAGATTCAAATAAAACTATCTAA
TAATTATAACATTTGAATCAATAATGTCAAAAAGAACACGATAAAGGTGCAATCGTTTGA
AATTTTCAATATTTCTATTTAGAAAAACAATAAAGGATTTAATCAGCTAATTGTTTGTTT
AGATACATAGAGAAAATGTTGTTCTCAATTATTATCAACCTAGTTATTTCAATATGTGCA
TACTTTCTTGCATGTAAACTCATACCGGGATTAAAAGAAATGTTTCTAAAAGCTGGAATC
TCTGGAATTGACATGAACAAAAGAAACAAAAACAAAATTCCTGAAGCATTTGGTGTGGTA
ACTGGTTCAGGAATAAATGGATTAGAAGTGGGTCAATCTATCATCATCTCAAGCTGTGTC
ATCATTTTTAACATGATTCAAATTATCAATGACTCGGTTGCAGAGAAACATCAACTCTCA
TTATATATTATGCTTCCTTACTTGGCTACAACTTTAGCTTTGTGGAAATTTAACAAATAC
CCTTCACAAGTGTTTGTAGGTGACACGTTCAACTATTTATCTGGAATGACATTTGCTGTG
GTTGGCATCTTAGGACACTTTAGCAAAACAATTTTACTCTTTTTCATACCACAAATATTG
AATTTCTTATATTCAGTGCCACAACTTTTTCATTTTATTCCATGTCCTCGTCATCGACTT
CCTAAATTTGATCCCGAGACTGGTCTTTTAAACTACAGCAAAACAACTTTTAAAGAAAAT
GAATTGAATTCTTTGGGACGTTTAATATTTGTTATACTTAAAACACTGAAATTGATAAAG
TGGGAAAAGAACGAAGACGACGGTATAATTATATGCAACAATCTTACAATCATCAATTTC
TTTATCCTATTTACTGGACCAATTCATGAAGAAAAATTGAACAACTATATTCTTGTTTTT
CAAATTATTTGTTCATGTTTTGCATTTCTAATTCGATATCCATTGGCGCAATATTTTTAT
AGTGACAATCTGTCATAG

>g3847.t10 Gene=g3847 Length=280
MLFSIIINLVISICAYFLACKLIPGLKEMFLKAGISGIDMNKRNKNKIPEAFGVVTGSGI
NGLEVGQSIIISSCVIIFNMIQIINDSVAEKHQLSLYIMLPYLATTLALWKFNKYPSQVF
VGDTFNYLSGMTFAVVGILGHFSKTILLFFIPQILNFLYSVPQLFHFIPCPRHRLPKFDP
ETGLLNYSKTTFKENELNSLGRLIFVILKTLKLIKWEKNEDDGIIICNNLTIINFFILFT
GPIHEEKLNNYILVFQIICSCFAFLIRYPLAQYFYSDNLS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
24 g3847.t10 CDD cd06855 GT_GPT_euk 59 188 2.77971E-61
3 g3847.t10 PANTHER PTHR10571 UDP-N-ACETYLGLUCOSAMINE–DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE 4 57 2.5E-89
2 g3847.t10 PANTHER PTHR10571 UDP-N-ACETYLGLUCOSAMINE–DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE 59 275 2.5E-89
1 g3847.t10 Pfam PF00953 Glycosyl transferase family 4 59 140 2.8E-15
16 g3847.t10 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
23 g3847.t10 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 23 -
13 g3847.t10 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 24 93 -
22 g3847.t10 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 94 112 -
15 g3847.t10 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 113 123 -
19 g3847.t10 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 124 140 -
12 g3847.t10 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 141 146 -
21 g3847.t10 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 147 168 -
17 g3847.t10 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 169 222 -
18 g3847.t10 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 223 239 -
11 g3847.t10 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 240 250 -
20 g3847.t10 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 251 270 -
14 g3847.t10 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 271 280 -
5 g3847.t10 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 4 26 -
9 g3847.t10 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 62 84 -
7 g3847.t10 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 94 113 -
8 g3847.t10 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 125 142 -
10 g3847.t10 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 146 168 -
4 g3847.t10 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 224 243 -
6 g3847.t10 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 253 275 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003975 UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity MF
GO:0016021 integral component of membrane CC
GO:0006487 protein N-linked glycosylation BP
GO:0006488 dolichol-linked oligosaccharide biosynthetic process BP
GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values