Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative UDP-N-acetylglucosamine–dolichyl-phosphate N-acetylglucosaminephosphotransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3847 g3847.t11 TSS g3847.t11 28345844 28345844
chr_3 g3847 g3847.t11 isoform g3847.t11 28345984 28346770
chr_3 g3847 g3847.t11 exon g3847.t11.exon1 28345984 28345988
chr_3 g3847 g3847.t11 exon g3847.t11.exon2 28346109 28346304
chr_3 g3847 g3847.t11 cds g3847.t11.CDS1 28346162 28346304
chr_3 g3847 g3847.t11 exon g3847.t11.exon3 28346366 28346770
chr_3 g3847 g3847.t11 cds g3847.t11.CDS2 28346366 28346768
chr_3 g3847 g3847.t11 TTS g3847.t11 NA NA

Sequences

>g3847.t11 Gene=g3847 Length=606
ACACGAAAAACAATAAAGGATTTAATCAGCTAATTGTTTGTTTAGATACATAGAGAAAAT
GTTGTTCTCAATTATTATCAACCTAGTTATTTCAATATGTGCATACTTTCTTGCATGTAA
ACTCATACCGGGATTAAAAGAAATGTTTCTAAAAGCTGGAATCTCTGGAATTGACATGAA
CAAAAGAAACAAAAACAAAATTCCTGAAGCATTTGGTGTGGTAACTGGTTGTGTGTTCTT
AATCGCACTATTTTGCTTTATTCCAATACCATTTGGTCATATATTTTTTGAGGGAAAAAC
TGATGTGAACTTTCCACATCATGAATTTGTGGAATTAATTGCAGCTCTGTTATCAATTTG
TTGTATGATTTTACTTGGTTTTGCTGATGATGTACTTGATCTACGATGGCGTCATAAATT
ATTATTACCAACTATTGCCTCATTACCTCTCTTAATTGTATATTATGTGAATTTCAATTC
AACAACTATAATTTTACCAAAGATAGTTCATAACATTATATCGAAATCAATCGATATTGG
ATTTCTCTATTACATTTATATGGGAATGCTTGCAGTTTTCTGCACAAATGCTATCAATAT
TTTAGC

>g3847.t11 Gene=g3847 Length=182
MLFSIIINLVISICAYFLACKLIPGLKEMFLKAGISGIDMNKRNKNKIPEAFGVVTGCVF
LIALFCFIPIPFGHIFFEGKTDVNFPHHEFVELIAALLSICCMILLGFADDVLDLRWRHK
LLLPTIASLPLLIVYYVNFNSTTIILPKIVHNIISKSIDIGFLYYIYMGMLAVFCTNAIN
IL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
19 g3847.t11 CDD cd06855 GT_GPT_euk 23 182 2.79107E-63
2 g3847.t11 PANTHER PTHR10571 UDP-N-ACETYLGLUCOSAMINE–DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE 4 182 2.9E-61
1 g3847.t11 Pfam PF00953 Glycosyl transferase family 4 94 182 1.8E-15
11 g3847.t11 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
17 g3847.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 23 -
8 g3847.t11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 24 50 -
18 g3847.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 51 70 -
13 g3847.t11 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 71 89 -
14 g3847.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 90 109 -
9 g3847.t11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 110 120 -
15 g3847.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 121 138 -
12 g3847.t11 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 139 161 -
16 g3847.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 162 181 -
10 g3847.t11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 182 182 -
4 g3847.t11 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 4 26 -
6 g3847.t11 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 53 75 -
3 g3847.t11 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 90 109 -
5 g3847.t11 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 122 144 -
7 g3847.t11 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 159 181 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003975 UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity MF
GO:0016021 integral component of membrane CC
GO:0006487 protein N-linked glycosylation BP
GO:0006488 dolichol-linked oligosaccharide biosynthetic process BP
GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values