Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative UDP-N-acetylglucosamine–dolichyl-phosphate N-acetylglucosaminephosphotransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3847 g3847.t14 isoform g3847.t14 28349609 28350080
chr_3 g3847 g3847.t14 exon g3847.t14.exon1 28349609 28350080
chr_3 g3847 g3847.t14 cds g3847.t14.CDS1 28349628 28350080
chr_3 g3847 g3847.t14 TTS g3847.t14 28350108 28350108
chr_3 g3847 g3847.t14 TSS g3847.t14 NA NA

Sequences

>g3847.t14 Gene=g3847 Length=472
GTTCAACTATTTATCTGGAATGACATTTGCTGTGGTTGGCATCTTAGGACACTTTAGCAA
AACAATTTTACTCTTTTTCATACCACAAATATTGAATTTCTTATATTCAGTGCCACAACT
TTTTCATTTTATTCCATGTCCTCGTCATCGACTTCCTAAATTTGATCCCGAGACTGGTCT
TTTAAACTACAGCAAAACAACTTTTAAAGAAAATGAATTGAATTCTTTGGGACGTTTAAT
ATTTGTTATACTTAAAACACTGAAATTGATAAAGTGGGAAAAGAACGAAGACGACGGTAT
AATTATATGCAACAATCTTACAATCATCAATTTCTTTATCCTATTTACTGGACCAATTCA
TGAAGAAAAATTGAACAACTATATTCTTGTTTTTCAAATTATTTGTTCATGTTTTGCATT
TCTAATTCGATATCCATTGGCGCAATATTTTTATAGTGACAATCTGTCATAG

>g3847.t14 Gene=g3847 Length=150
MTFAVVGILGHFSKTILLFFIPQILNFLYSVPQLFHFIPCPRHRLPKFDPETGLLNYSKT
TFKENELNSLGRLIFVILKTLKLIKWEKNEDDGIIICNNLTIINFFILFTGPIHEEKLNN
YILVFQIICSCFAFLIRYPLAQYFYSDNLS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g3847.t14 PANTHER PTHR10571:SF0 UDP-N-ACETYLGLUCOSAMINE–DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE 1 145 2.2E-43
2 g3847.t14 PANTHER PTHR10571 UDP-N-ACETYLGLUCOSAMINE–DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE 1 145 2.2E-43
9 g3847.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 15 -
11 g3847.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 16 38 -
6 g3847.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 39 92 -
10 g3847.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 93 114 -
8 g3847.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 115 119 -
12 g3847.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 120 140 -
7 g3847.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 141 150 -
5 g3847.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 15 37 -
4 g3847.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 94 113 -
3 g3847.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 123 145 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003975 UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity MF
GO:0006487 protein N-linked glycosylation BP
GO:0006488 dolichol-linked oligosaccharide biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values