Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3847 g3847.t17 isoform g3847.t17 28350080 28351033
chr_3 g3847 g3847.t17 exon g3847.t17.exon1 28350080 28350590
chr_3 g3847 g3847.t17 exon g3847.t17.exon2 28350656 28351033
chr_3 g3847 g3847.t17 cds g3847.t17.CDS1 28350657 28350971
chr_3 g3847 g3847.t17 TSS g3847.t17 NA NA
chr_3 g3847 g3847.t17 TTS g3847.t17 NA NA

Sequences

>g3847.t17 Gene=g3847 Length=889
GAATTTAATAAATTTCAATCATATATATCAAAAAAAAATCATTCATGTGACTATTAATTT
TATTAATCAATTTACGGTGAAAGCAATTTTATGATTATTATATTAAATGTATGGAGATAC
TTAAATAATTCAAAAAAGTTAAGTTAAAATACACTTAAACCAAATCTGCTACATTCATAG
GCATCTCATCGATCTGCGTTGAATAGTATTGTTCAATATCTCTAAGAATCCTTATGTCGT
CTGATTTTACAAAATTAATGCCAACACCTTTGCGACCGAAACGACCTGAGCGACCGATTC
TAAAATTCGTTAAAGTTTAATTGTAACAGGCGCATATTAATAGAAGTTAAATTTATCTAC
CTGTGAATATACAATTCTCTGTTGTTTGGTAGATCATAATTGATAACGAGAGAAACTTGT
TGAACATCAATACCTCTTGCCCAAACGTCAGTTGTGATTAAAACTCTTGTTTGTCCAGAT
CGGAATTCTTTCATAATCTCATCACGTTCCTCATGTCACCATGCATAGAACTGACAGTGA
AATTTGCTTCACGCATTTTTTCAGTCAACCAATCGACTTTTCTCTTTGTATTACAAAAAA
TGACTGCTTGTGTGATTGTCAGTGTATCGTATAAATCACACAGTGTATCAAACTTCCATT
CTTCTCTTTCGACAGCAACAAAAAACTGTTTGATACCTTCAAGTGTTAATTCATCACGTT
TTACAAGAATACGAATGGGATCCGTCATGAATTTGCTAGTCATTTCCAGAATTTCGTGTG
GTAATGTAGCAGAAATTAAACATACTTGTGTAGCTGGTGGCAAATAACGATATACATCAT
AAATTTGTTCTTTAAAACCTTTGTTTAACATTTCATCAGCTTCATCCAA

>g3847.t17 Gene=g3847 Length=104
MSPCIELTVKFASRIFSVNQSTFLFVLQKMTACVIVSVSYKSHSVSNFHSSLSTATKNCL
IPSSVNSSRFTRIRMGSVMNLLVISRISCGNVAEIKHTCVAGGK

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed