Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3847 g3847.t18 isoform g3847.t18 28350080 28351036
chr_3 g3847 g3847.t18 exon g3847.t18.exon1 28350080 28350387
chr_3 g3847 g3847.t18 exon g3847.t18.exon2 28350449 28350590
chr_3 g3847 g3847.t18 exon g3847.t18.exon3 28350649 28351036
chr_3 g3847 g3847.t18 cds g3847.t18.CDS1 28350657 28350971
chr_3 g3847 g3847.t18 TSS g3847.t18 NA NA
chr_3 g3847 g3847.t18 TTS g3847.t18 NA NA

Sequences

>g3847.t18 Gene=g3847 Length=838
GAATTTAATAAATTTCAATCATATATATCAAAAAAAAATCATTCATGTGACTATTAATTT
TATTAATCAATTTACGGTGAAAGCAATTTTATGATTATTATATTAAATGTATGGAGATAC
TTAAATAATTCAAAAAAGTTAAGTTAAAATACACTTAAACCAAATCTGCTACATTCATAG
GCATCTCATCGATCTGCGTTGAATAGTATTGTTCAATATCTCTAAGAATCCTTATGTCGT
CTGATTTTACAAAATTAATGCCAACACCTTTGCGACCGAAACGACCTGAGCGACCGATTC
TAAAATTCTACAATTCTCTGTTGTTTGGTAGATCATAATTGATAACGAGAGAAACTTGTT
GAACATCAATACCTCTTGCCCAAACGTCAGTTGTGATTAAAACTCTTGTTTGTCCAGATC
GGAATTCTTTCATAATCTCATCACGTTCCTTTTGTGGCATGTCACCATGCATAGAACTGA
CAGTGAAATTTGCTTCACGCATTTTTTCAGTCAACCAATCGACTTTTCTCTTTGTATTAC
AAAAAATGACTGCTTGTGTGATTGTCAGTGTATCGTATAAATCACACAGTGTATCAAACT
TCCATTCTTCTCTTTCGACAGCAACAAAAAACTGTTTGATACCTTCAAGTGTTAATTCAT
CACGTTTTACAAGAATACGAATGGGATCCGTCATGAATTTGCTAGTCATTTCCAGAATTT
CGTGTGGTAATGTAGCAGAAATTAAACATACTTGTGTAGCTGGTGGCAAATAACGATATA
CATCATAAATTTGTTCTTTAAAACCTTTGTTTAACATTTCATCAGCTTCATCCAAAAC

>g3847.t18 Gene=g3847 Length=104
MSPCIELTVKFASRIFSVNQSTFLFVLQKMTACVIVSVSYKSHSVSNFHSSLSTATKNCL
IPSSVNSSRFTRIRMGSVMNLLVISRISCGNVAEIKHTCVAGGK

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed