Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3847 g3847.t23 isoform g3847.t23 28350080 28351471
chr_3 g3847 g3847.t23 exon g3847.t23.exon1 28350080 28350360
chr_3 g3847 g3847.t23 exon g3847.t23.exon2 28350423 28350590
chr_3 g3847 g3847.t23 exon g3847.t23.exon3 28350648 28351037
chr_3 g3847 g3847.t23 cds g3847.t23.CDS1 28350657 28350971
chr_3 g3847 g3847.t23 exon g3847.t23.exon4 28351104 28351471
chr_3 g3847 g3847.t23 TSS g3847.t23 NA NA
chr_3 g3847 g3847.t23 TTS g3847.t23 NA NA

Sequences

>g3847.t23 Gene=g3847 Length=1207
GAATTTAATAAATTTCAATCATATATATCAAAAAAAAATCATTCATGTGACTATTAATTT
TATTAATCAATTTACGGTGAAAGCAATTTTATGATTATTATATTAAATGTATGGAGATAC
TTAAATAATTCAAAAAAGTTAAGTTAAAATACACTTAAACCAAATCTGCTACATTCATAG
GCATCTCATCGATCTGCGTTGAATAGTATTGTTCAATATCTCTAAGAATCCTTATGTCGT
CTGATTTTACAAAATTAATGCCAACACCTTTGCGACCGAAAAAGTTAAATTTATCTACCT
GTGAATATACAATTCTCTGTTGTTTGGTAGATCATAATTGATAACGAGAGAAACTTGTTG
AACATCAATACCTCTTGCCCAAACGTCAGTTGTGATTAAAACTCTTGTTTGTCCAGATCG
GAATTCTTTCATAATCTCATCACGTTCCTTTTTGTGGCATGTCACCATGCATAGAACTGA
CAGTGAAATTTGCTTCACGCATTTTTTCAGTCAACCAATCGACTTTTCTCTTTGTATTAC
AAAAAATGACTGCTTGTGTGATTGTCAGTGTATCGTATAAATCACACAGTGTATCAAACT
TCCATTCTTCTCTTTCGACAGCAACAAAAAACTGTTTGATACCTTCAAGTGTTAATTCAT
CACGTTTTACAAGAATACGAATGGGATCCGTCATGAATTTGCTAGTCATTTCCAGAATTT
CGTGTGGTAATGTAGCAGAAATTAAACATACTTGTGTAGCTGGTGGCAAATAACGATATA
CATCATAAATTTGTTCTTTAAAACCTTTGTTTAACATTTCATCAGCTTCATCCAAAACCC
ATTTTAATTGCACGAGTTCTCAGCACTCGACGTTTTATCATGTCAAAAACTCGACCTGGA
GTTCCACTTACAACATGTTGACCATAATCTAATTTGCGAATATCTTCTCCCAAATTTGTA
CCTCCAATACAAGCATGGCATTGAACGTTCATAAAATCTCCAAGAGCGAGAATGACTTTT
TGAATCTGTACGGCCAATTCGCGAGTAGGAGATAAGCAAAGAACTTGAGTTTCACGAAGA
GCCGTGTCTAATTTCTCTAAAATTGCGATTGAAAAAGTTGCGGTTTTACCAGTACCGGAT
TGAGCTTGTGCTATTACATCGCGTCCCTTTACAATCGGTAAAATACTTCTCTGCTGAATG
GCTGATG

>g3847.t23 Gene=g3847 Length=104
MSPCIELTVKFASRIFSVNQSTFLFVLQKMTACVIVSVSYKSHSVSNFHSSLSTATKNCL
IPSSVNSSRFTRIRMGSVMNLLVISRISCGNVAEIKHTCVAGGK

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed