General information for g3847.t39
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3847 is located on chr_3: 28350080..28358891 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3847 | g3847.t39 | isoform | g3847.t39 | 28350080 | 28351693 |
| chr_3 | g3847 | g3847.t39 | exon | g3847.t39.exon1 | 28350080 | 28350378 |
| chr_3 | g3847 | g3847.t39 | exon | g3847.t39.exon2 | 28350440 | 28350590 |
| chr_3 | g3847 | g3847.t39 | exon | g3847.t39.exon3 | 28350648 | 28351040 |
| chr_3 | g3847 | g3847.t39 | cds | g3847.t39.CDS1 | 28350657 | 28350971 |
| chr_3 | g3847 | g3847.t39 | exon | g3847.t39.exon4 | 28351104 | 28351482 |
| chr_3 | g3847 | g3847.t39 | exon | g3847.t39.exon5 | 28351539 | 28351693 |
| chr_3 | g3847 | g3847.t39 | TSS | g3847.t39 | NA | NA |
| chr_3 | g3847 | g3847.t39 | TTS | g3847.t39 | NA | NA |
Sequences
>g3847.t39 Gene=g3847 Length=1377
GAATTTAATAAATTTCAATCATATATATCAAAAAAAAATCATTCATGTGACTATTAATTT
TATTAATCAATTTACGGTGAAAGCAATTTTATGATTATTATATTAAATGTATGGAGATAC
TTAAATAATTCAAAAAAGTTAAGTTAAAATACACTTAAACCAAATCTGCTACATTCATAG
GCATCTCATCGATCTGCGTTGAATAGTATTGTTCAATATCTCTAAGAATCCTTATGTCGT
CTGATTTTACAAAATTAATGCCAACACCTTTGCGACCGAAACGACCTGAGCGACCGATTC
TGTGAATATACAATTCTCTGTTGTTTGGTAGATCATAATTGATAACGAGAGAAACTTGTT
GAACATCAATACCTCTTGCCCAAACGTCAGTTGTGATTAAAACTCTTGTTTGTCCAGATC
GGAATTCTTTCATAATCTCATCACGTTCCTTTTTGTGGCATGTCACCATGCATAGAACTG
ACAGTGAAATTTGCTTCACGCATTTTTTCAGTCAACCAATCGACTTTTCTCTTTGTATTA
CAAAAAATGACTGCTTGTGTGATTGTCAGTGTATCGTATAAATCACACAGTGTATCAAAC
TTCCATTCTTCTCTTTCGACAGCAACAAAAAACTGTTTGATACCTTCAAGTGTTAATTCA
TCACGTTTTACAAGAATACGAATGGGATCCGTCATGAATTTGCTAGTCATTTCCAGAATT
TCGTGTGGTAATGTAGCAGAAATTAAACATACTTGTGTAGCTGGTGGCAAATAACGATAT
ACATCATAAATTTGTTCTTTAAAACCTTTGTTTAACATTTCATCAGCTTCATCCAAAACC
TATCATTTTAATTGCACGAGTTCTCAGCACTCGACGTTTTATCATGTCAAAAACTCGACC
TGGAGTTCCACTTACAACATGTTGACCATAATCTAATTTGCGAATATCTTCTCCCAAATT
TGTACCTCCAATACAAGCATGGCATTGAACGTTCATAAAATCTCCAAGAGCGAGAATGAC
TTTTTGAATCTGTACGGCCAATTCGCGAGTAGGAGATAAGCAAAGAACTTGAGTTTCACG
AAGAGCCGTGTCTAATTTCTCTAAAATTGCGATTGAAAAAGTTGCGGTTTTACCAGTACC
GGATTGAGCTTGTGCTATTACATCGCGTCCCTTTACAATCGGTAAAATACTTCTCTGCTG
AATGGCTGATGGTTTCTCAAATCCATAAGCATATATTCCTCTTAAGAGTTCTTCACGTAA
TTTCATCGATTGAAATGTTGGAACAACTTCAACATCTTCACTTGTCTCAAATTCAACATT
TGATAAATCTTCCGTCACTGATTTTTTCGAAGTTGATGCCATTTTTGTTGCTTCACA
>g3847.t39 Gene=g3847 Length=104
MSPCIELTVKFASRIFSVNQSTFLFVLQKMTACVIVSVSYKSHSVSNFHSSLSTATKNCL
IPSSVNSSRFTRIRMGSVMNLLVISRISCGNVAEIKHTCVAGGK
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed