General information for g3847.t56
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3847 is located on chr_3: 28350080..28358891 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3847 | g3847.t56 | isoform | g3847.t56 | 28350080 | 28351693 |
| chr_3 | g3847 | g3847.t56 | exon | g3847.t56.exon1 | 28350080 | 28350380 |
| chr_3 | g3847 | g3847.t56 | exon | g3847.t56.exon2 | 28350443 | 28350590 |
| chr_3 | g3847 | g3847.t56 | exon | g3847.t56.exon3 | 28350649 | 28351040 |
| chr_3 | g3847 | g3847.t56 | cds | g3847.t56.CDS1 | 28350657 | 28350971 |
| chr_3 | g3847 | g3847.t56 | exon | g3847.t56.exon4 | 28351104 | 28351482 |
| chr_3 | g3847 | g3847.t56 | exon | g3847.t56.exon5 | 28351539 | 28351693 |
| chr_3 | g3847 | g3847.t56 | TSS | g3847.t56 | NA | NA |
| chr_3 | g3847 | g3847.t56 | TTS | g3847.t56 | NA | NA |
Sequences
>g3847.t56 Gene=g3847 Length=1375
GAATTTAATAAATTTCAATCATATATATCAAAAAAAAATCATTCATGTGACTATTAATTT
TATTAATCAATTTACGGTGAAAGCAATTTTATGATTATTATATTAAATGTATGGAGATAC
TTAAATAATTCAAAAAAGTTAAGTTAAAATACACTTAAACCAAATCTGCTACATTCATAG
GCATCTCATCGATCTGCGTTGAATAGTATTGTTCAATATCTCTAAGAATCCTTATGTCGT
CTGATTTTACAAAATTAATGCCAACACCTTTGCGACCGAAACGACCTGAGCGACCGATTC
TTGAATATACAATTCTCTGTTGTTTGGTAGATCATAATTGATAACGAGAGAAACTTGTTG
AACATCAATACCTCTTGCCCAAACGTCAGTTGTGATTAAAACTCTTGTTTGTCCAGATCG
GAATTCTTTCATAATCTCATCACGTTCCTTTTGTGGCATGTCACCATGCATAGAACTGAC
AGTGAAATTTGCTTCACGCATTTTTTCAGTCAACCAATCGACTTTTCTCTTTGTATTACA
AAAAATGACTGCTTGTGTGATTGTCAGTGTATCGTATAAATCACACAGTGTATCAAACTT
CCATTCTTCTCTTTCGACAGCAACAAAAAACTGTTTGATACCTTCAAGTGTTAATTCATC
ACGTTTTACAAGAATACGAATGGGATCCGTCATGAATTTGCTAGTCATTTCCAGAATTTC
GTGTGGTAATGTAGCAGAAATTAAACATACTTGTGTAGCTGGTGGCAAATAACGATATAC
ATCATAAATTTGTTCTTTAAAACCTTTGTTTAACATTTCATCAGCTTCATCCAAAACCTA
TCATTTTAATTGCACGAGTTCTCAGCACTCGACGTTTTATCATGTCAAAAACTCGACCTG
GAGTTCCACTTACAACATGTTGACCATAATCTAATTTGCGAATATCTTCTCCCAAATTTG
TACCTCCAATACAAGCATGGCATTGAACGTTCATAAAATCTCCAAGAGCGAGAATGACTT
TTTGAATCTGTACGGCCAATTCGCGAGTAGGAGATAAGCAAAGAACTTGAGTTTCACGAA
GAGCCGTGTCTAATTTCTCTAAAATTGCGATTGAAAAAGTTGCGGTTTTACCAGTACCGG
ATTGAGCTTGTGCTATTACATCGCGTCCCTTTACAATCGGTAAAATACTTCTCTGCTGAA
TGGCTGATGGTTTCTCAAATCCATAAGCATATATTCCTCTTAAGAGTTCTTCACGTAATT
TCATCGATTGAAATGTTGGAACAACTTCAACATCTTCACTTGTCTCAAATTCAACATTTG
ATAAATCTTCCGTCACTGATTTTTTCGAAGTTGATGCCATTTTTGTTGCTTCACA
>g3847.t56 Gene=g3847 Length=104
MSPCIELTVKFASRIFSVNQSTFLFVLQKMTACVIVSVSYKSHSVSNFHSSLSTATKNCL
IPSSVNSSRFTRIRMGSVMNLLVISRISCGNVAEIKHTCVAGGK
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed