Gene loci information

Transcript annotation

  • This transcript has been annotated as UDP-N-acetylglucosamine–dolichyl-phosphate N-acetylglucosaminephosphotransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3847 g3847.t6 isoform g3847.t6 28345829 28350080
chr_3 g3847 g3847.t6 exon g3847.t6.exon1 28345829 28345988
chr_3 g3847 g3847.t6 TSS g3847.t6 28345844 28345844
chr_3 g3847 g3847.t6 exon g3847.t6.exon2 28346149 28346304
chr_3 g3847 g3847.t6 cds g3847.t6.CDS1 28346162 28346304
chr_3 g3847 g3847.t6 exon g3847.t6.exon3 28346366 28346938
chr_3 g3847 g3847.t6 cds g3847.t6.CDS2 28346366 28346938
chr_3 g3847 g3847.t6 exon g3847.t6.exon4 28349579 28350080
chr_3 g3847 g3847.t6 cds g3847.t6.CDS3 28349579 28350080
chr_3 g3847 g3847.t6 TTS g3847.t6 28350108 28350108

Sequences

>g3847.t6 Gene=g3847 Length=1391
AGTAATAGCAAGACAGTTTAGAGCCACCACTCGAGTAATTTTGATACTTTTTCATAAATA
ATCTTTCTTATAAAAATTCTATTAAGAAAATAAAAATAAGATTCAAATAAAACTATCTAA
TAATTATAACATTTGAATCAATAATGTCAAAAAGAACACGATACATAGAGAAAATGTTGT
TCTCAATTATTATCAACCTAGTTATTTCAATATGTGCATACTTTCTTGCATGTAAACTCA
TACCGGGATTAAAAGAAATGTTTCTAAAAGCTGGAATCTCTGGAATTGACATGAACAAAA
GAAACAAAAACAAAATTCCTGAAGCATTTGGTGTGGTAACTGGTTGTGTGTTCTTAATCG
CACTATTTTGCTTTATTCCAATACCATTTGGTCATATATTTTTTGAGGGAAAAACTGATG
TGAACTTTCCACATCATGAATTTGTGGAATTAATTGCAGCTCTGTTATCAATTTGTTGTA
TGATTTTACTTGGTTTTGCTGATGATGTACTTGATCTACGATGGCGTCATAAATTATTAT
TACCAACTATTGCCTCATTACCTCTCTTAATTGTATATTATGTGAATTTCAATTCAACAA
CTATAATTTTACCAAAGATAGTTCATAACATTATATCGAAATCAATCGATATTGGATTTC
TCTATTACATTTATATGGGAATGCTTGCAGTTTTCTGCACAAATGCTATCAATATTTTAG
CAGGAATAAATGGATTAGAAGTGGGTCAATCTATCATCATCTCAAGCTGTGTCATCATTT
TTAACATGATTCAAATTATCAATGACTCGGTTGCAGAGAAACATCAACTCTCATTATATA
TTATGCTTCCTTACTTGGCTACAACTTTAGCTTTGTGGAAATTTAACAAATACCCTTCAC
AAGTGTTTGTAGGTGACACGTTCAACTATTTATCTGGAATGACATTTGCTGTGGTTGGCA
TCTTAGGACACTTTAGCAAAACAATTTTACTCTTTTTCATACCACAAATATTGAATTTCT
TATATTCAGTGCCACAACTTTTTCATTTTATTCCATGTCCTCGTCATCGACTTCCTAAAT
TTGATCCCGAGACTGGTCTTTTAAACTACAGCAAAACAACTTTTAAAGAAAATGAATTGA
ATTCTTTGGGACGTTTAATATTTGTTATACTTAAAACACTGAAATTGATAAAGTGGGAAA
AGAACGAAGACGACGGTATAATTATATGCAACAATCTTACAATCATCAATTTCTTTATCC
TATTTACTGGACCAATTCATGAAGAAAAATTGAACAACTATATTCTTGTTTTTCAAATTA
TTTGTTCATGTTTTGCATTTCTAATTCGATATCCATTGGCGCAATATTTTTATAGTGACA
ATCTGTCATAG

>g3847.t6 Gene=g3847 Length=405
MLFSIIINLVISICAYFLACKLIPGLKEMFLKAGISGIDMNKRNKNKIPEAFGVVTGCVF
LIALFCFIPIPFGHIFFEGKTDVNFPHHEFVELIAALLSICCMILLGFADDVLDLRWRHK
LLLPTIASLPLLIVYYVNFNSTTIILPKIVHNIISKSIDIGFLYYIYMGMLAVFCTNAIN
ILAGINGLEVGQSIIISSCVIIFNMIQIINDSVAEKHQLSLYIMLPYLATTLALWKFNKY
PSQVFVGDTFNYLSGMTFAVVGILGHFSKTILLFFIPQILNFLYSVPQLFHFIPCPRHRL
PKFDPETGLLNYSKTTFKENELNSLGRLIFVILKTLKLIKWEKNEDDGIIICNNLTIINF
FILFTGPIHEEKLNNYILVFQIICSCFAFLIRYPLAQYFYSDNLS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
37 g3847.t6 CDD cd06855 GT_GPT_euk 23 313 8.9748E-136
2 g3847.t6 PANTHER PTHR10571 UDP-N-ACETYLGLUCOSAMINE–DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE 4 400 4.1E-150
1 g3847.t6 Pfam PF00953 Glycosyl transferase family 4 94 265 6.4E-37
21 g3847.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
33 g3847.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 23 -
16 g3847.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 24 50 -
36 g3847.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 51 70 -
25 g3847.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 71 89 -
27 g3847.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 90 109 -
17 g3847.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 110 120 -
30 g3847.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 121 138 -
24 g3847.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 139 161 -
28 g3847.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 162 183 -
19 g3847.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 184 189 -
31 g3847.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 190 209 -
23 g3847.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 210 220 -
34 g3847.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 221 237 -
18 g3847.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 238 248 -
35 g3847.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 249 267 -
22 g3847.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 268 272 -
29 g3847.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 273 293 -
15 g3847.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 294 347 -
32 g3847.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 348 369 -
20 g3847.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 370 374 -
26 g3847.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 375 395 -
14 g3847.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 396 405 -
10 g3847.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 4 26 -
6 g3847.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 53 75 -
8 g3847.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 90 109 -
11 g3847.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 121 140 -
4 g3847.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 160 182 -
13 g3847.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 187 209 -
5 g3847.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 219 238 -
3 g3847.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 250 267 -
7 g3847.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 271 293 -
9 g3847.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 349 368 -
12 g3847.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 378 400 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003975 UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity MF
GO:0016021 integral component of membrane CC
GO:0006487 protein N-linked glycosylation BP
GO:0006488 dolichol-linked oligosaccharide biosynthetic process BP
GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity MF

KEGG

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values