General information for g3849.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cyclic AMP-responsive element-binding protein 3-like protein 4.
Parent gene
- The parent gene g3849 is located on chr_3: 28354530..28356720 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3849 | g3849.t1 | TSS | g3849.t1 | 28352135 | 28352135 |
| chr_3 | g3849 | g3849.t1 | isoform | g3849.t1 | 28352284 | 28354530 |
| chr_3 | g3849 | g3849.t1 | exon | g3849.t1.exon1 | 28352284 | 28352301 |
| chr_3 | g3849 | g3849.t1 | cds | g3849.t1.CDS1 | 28352284 | 28352301 |
| chr_3 | g3849 | g3849.t1 | exon | g3849.t1.exon2 | 28352793 | 28352974 |
| chr_3 | g3849 | g3849.t1 | cds | g3849.t1.CDS2 | 28352793 | 28352974 |
| chr_3 | g3849 | g3849.t1 | exon | g3849.t1.exon3 | 28353042 | 28353274 |
| chr_3 | g3849 | g3849.t1 | cds | g3849.t1.CDS3 | 28353042 | 28353274 |
| chr_3 | g3849 | g3849.t1 | exon | g3849.t1.exon4 | 28353347 | 28354530 |
| chr_3 | g3849 | g3849.t1 | cds | g3849.t1.CDS4 | 28353347 | 28354530 |
| chr_3 | g3849 | g3849.t1 | TTS | g3849.t1 | 28354712 | 28354712 |
Sequences
>g3849.t1 Gene=g3849 Length=1617
ATGGATAATAATATTTTGAATAATGACTGGCTAGATTCGATTTTGTCGGATGAGTTATTG
AATGCAGCAGATTTTGGAGGACAAGATGATATTTTCACAAATGAACTCGAGAATGCTATA
TTTGTAGATGATAATTTTAATGAGCCTATTTTTTCGTCTGCCGCATCAGATAGCGGATTG
TCAAGTGATAATTTAGATTTGGATATAAACAATGATTTTGATTTATTAAGCTCATGTTTA
CCATCTCCTGAAAGTGAGAGCAACAACAGTTATAATGAGAAAAAACCCGTAAAAGCTAAT
GCTAAATCTCAGCGCCAACAACAACAACAAAAAGAAGCCATACCTATACAAAAGCGTGGC
ACAAGAAACAGTACTAAGAACCATAGAAACAGTTCGTTGACGAAAACAAGTAATAACAAC
AACTTGAAGAAAGACTCTAAAAACAATCAAAGCAAAAATGGAATTAATAAATCACGTTCA
ATTATTGTACCGGTCACATCACAAAACATCAAAGAGATTCGCTCTATAAAAATTGTCAAC
TCTGGATCTTCACAATTGAAATCAGCAAATATAAAAGCAGTCGCAGCAAATCTTTTACAG
AAATCAAAACAAGGTCTTTTACAAAAGAATATCCTTATTCCAAAACAAGATATTGAGGAT
GATGCAAATATGTTAAATTTCGACGAAATAATGCATGAAACTGATGAAATGATTGCTGCA
CATGAAGAAAATGATGATGAAAACGAAGATGACGATGACATTTCCTCATCAGAAAGTTGC
TCTTCGGGCTATCCAAAGCTGGTGCTAACAAATGAAGAGAAACGTCTCCTTGCAAAAGAA
GGAATAACATTACCGTCAAGTTACCCACTTACAAAACAAGAAGAGCGAGAGCTCAAACGT
ATTCGTCGTAAAATTCGCAACAAGATTTCTGCACAGGATTCACGTAAACGCAAGAAGGAA
TATATTGATGGTTTAGAAGAGCGTGTCAAACAGTGCTCAGAAGAGAATCACATTTTATTG
AAAAGAATTAAAGTATTGCAATCACAAAATTATGACCTTATGTCAAAAATGAAAAAGTTA
CAGACATTACTTACAAAGAGTACAGGCAAGACAGCGCAACCTGCAACATGTCTAATGATT
TTGCTTTTATCTATGGCACTTGTTGCTGTACCAAACTTGAAACTTGGCAAACAGAGTGCA
CAAGATTTAGTTACTGCATTTGGTGAACAACAAAATCGACGTAATTTGTTATTTGACCTT
AAATCTGAATTAGAGGATTTGGAGTCAACAAATTTTATGCAAACAAACTTTGTTCCTGGC
GAACACGATTACATCGAGAATGTCTACAAATATATCGAGTCAAATGACATTCCATCTTCA
CAGCCACCAGAAAAGAGATCGAAAACATTAATTGATTATGATATTGATTCTATGGATAAA
TGGGAACTACAGAAACGATCACACGATGACTTTGTTGATATGGACTATGAGATGGACACA
AATGAAACAGAATTGCTGCTGCAACAAATTGGAAAGAATTTTTCAACTACAGATTCTCAA
CGAATTTTGGCCGAAAGCATAATAAATCTATCAAAACTGCAGCAACAACAGCACTAA
>g3849.t1 Gene=g3849 Length=538
MDNNILNNDWLDSILSDELLNAADFGGQDDIFTNELENAIFVDDNFNEPIFSSAASDSGL
SSDNLDLDINNDFDLLSSCLPSPESESNNSYNEKKPVKANAKSQRQQQQQKEAIPIQKRG
TRNSTKNHRNSSLTKTSNNNNLKKDSKNNQSKNGINKSRSIIVPVTSQNIKEIRSIKIVN
SGSSQLKSANIKAVAANLLQKSKQGLLQKNILIPKQDIEDDANMLNFDEIMHETDEMIAA
HEENDDENEDDDDISSSESCSSGYPKLVLTNEEKRLLAKEGITLPSSYPLTKQEERELKR
IRRKIRNKISAQDSRKRKKEYIDGLEERVKQCSEENHILLKRIKVLQSQNYDLMSKMKKL
QTLLTKSTGKTAQPATCLMILLLSMALVAVPNLKLGKQSAQDLVTAFGEQQNRRNLLFDL
KSELEDLESTNFMQTNFVPGEHDYIENVYKYIESNDIPSSQPPEKRSKTLIDYDIDSMDK
WELQKRSHDDFVDMDYEMDTNETELLLQQIGKNFSTTDSQRILAESIINLSKLQQQQH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g3849.t1 | CDD | cd14689 | bZIP_CREB3 | 298 | 358 | 9.74448E-25 |
| 6 | g3849.t1 | Coils | Coil | Coil | 291 | 311 | - |
| 7 | g3849.t1 | Coils | Coil | Coil | 315 | 342 | - |
| 5 | g3849.t1 | Gene3D | G3DSA:1.20.5.170 | - | 299 | 349 | 1.0E-15 |
| 13 | g3849.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 160 | - |
| 2 | g3849.t1 | PANTHER | PTHR45996:SF3 | AGAP001464-PB | 23 | 504 | 9.5E-92 |
| 3 | g3849.t1 | PANTHER | PTHR45996 | AGAP001464-PB | 23 | 504 | 9.5E-92 |
| 1 | g3849.t1 | Pfam | PF00170 | bZIP transcription factor | 295 | 357 | 5.9E-15 |
| 9 | g3849.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 371 | - |
| 10 | g3849.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 372 | 390 | - |
| 8 | g3849.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 391 | 538 | - |
| 14 | g3849.t1 | ProSiteProfiles | PS50217 | Basic-leucine zipper (bZIP) domain profile. | 297 | 360 | 11.45 |
| 12 | g3849.t1 | SMART | SM00338 | brlzneu | 295 | 359 | 3.3E-18 |
| 4 | g3849.t1 | SUPERFAMILY | SSF57959 | Leucine zipper domain | 298 | 356 | 1.69E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K09048 (cyclic AMP-responsive element-binding protein 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
