General information for g3849.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cyclic AMP-responsive element-binding protein 3-like protein 4.
Parent gene
- The parent gene g3849 is located on chr_3: 28354530..28356720 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3849 | g3849.t10 | TSS | g3849.t10 | 28352135 | 28352135 |
| chr_3 | g3849 | g3849.t10 | isoform | g3849.t10 | 28352284 | 28354530 |
| chr_3 | g3849 | g3849.t10 | exon | g3849.t10.exon1 | 28352284 | 28352301 |
| chr_3 | g3849 | g3849.t10 | cds | g3849.t10.CDS1 | 28352284 | 28352301 |
| chr_3 | g3849 | g3849.t10 | exon | g3849.t10.exon2 | 28352793 | 28352974 |
| chr_3 | g3849 | g3849.t10 | cds | g3849.t10.CDS2 | 28352793 | 28352974 |
| chr_3 | g3849 | g3849.t10 | exon | g3849.t10.exon3 | 28353072 | 28353274 |
| chr_3 | g3849 | g3849.t10 | cds | g3849.t10.CDS3 | 28353072 | 28353274 |
| chr_3 | g3849 | g3849.t10 | exon | g3849.t10.exon4 | 28353344 | 28354530 |
| chr_3 | g3849 | g3849.t10 | cds | g3849.t10.CDS4 | 28353344 | 28354530 |
| chr_3 | g3849 | g3849.t10 | TTS | g3849.t10 | 28354712 | 28354712 |
Sequences
>g3849.t10 Gene=g3849 Length=1590
ATGGATAATAATATTTTGAATAATGACTGGCTAGATTCGATTTTGTCGGATGAGTTATTG
AATGCAGCAGATTTTGGAGGACAAGATGATATTTTCACAAATGAACTCGAGAATGCTATA
TTTGTAGATGATAATTTTAATGAGCCTATTTTTTCGTCTGCCGCATCAGATAGCGGATTG
TCAAGTGATAATTTAGATTTCTCATGTTTACCATCTCCTGAAAGTGAGAGCAACAACAGT
TATAATGAGAAAAAACCCGTAAAAGCTAATGCTAAATCTCAGCGCCAACAACAACAACAA
AAAGAAGCCATACCTATACAAAAGCGTGGCACAAGAAACAGTACTAAGAACCATAGAAAC
AGTTCGTTGACGAAAACAAGTAATAACAACAACTTGAAGAAAGAAGACTCTAAAAACAAT
CAAAGCAAAAATGGAATTAATAAATCACGTTCAATTATTGTACCGGTCACATCACAAAAC
ATCAAAGAGATTCGCTCTATAAAAATTGTCAACTCTGGATCTTCACAATTGAAATCAGCA
AATATAAAAGCAGTCGCAGCAAATCTTTTACAGAAATCAAAACAAGGTCTTTTACAAAAG
AATATCCTTATTCCAAAACAAGATATTGAGGATGATGCAAATATGTTAAATTTCGACGAA
ATAATGCATGAAACTGATGAAATGATTGCTGCACATGAAGAAAATGATGATGAAAACGAA
GATGACGATGACATTTCCTCATCAGAAAGTTGCTCTTCGGGCTATCCAAAGCTGGTGCTA
ACAAATGAAGAGAAACGTCTCCTTGCAAAAGAAGGAATAACATTACCGTCAAGTTACCCA
CTTACAAAACAAGAAGAGCGAGAGCTCAAACGTATTCGTCGTAAAATTCGCAACAAGATT
TCTGCACAGGATTCACGTAAACGCAAGAAGGAATATATTGATGGTTTAGAAGAGCGTGTC
AAACAGTGCTCAGAAGAGAATCACATTTTATTGAAAAGAATTAAAGTATTGCAATCACAA
AATTATGACCTTATGTCAAAAATGAAAAAGTTACAGACATTACTTACAAAGAGTACAGGC
AAGACAGCGCAACCTGCAACATGTCTAATGATTTTGCTTTTATCTATGGCACTTGTTGCT
GTACCAAACTTGAAACTTGGCAAACAGAGTGCACAAGATTTAGTTACTGCATTTGGTGAA
CAACAAAATCGACGTAATTTGTTATTTGACCTTAAATCTGAATTAGAGGATTTGGAGTCA
ACAAATTTTATGCAAACAAACTTTGTTCCTGGCGAACACGATTACATCGAGAATGTCTAC
AAATATATCGAGTCAAATGACATTCCATCTTCACAGCCACCAGAAAAGAGATCGAAAACA
TTAATTGATTATGATATTGATTCTATGGATAAATGGGAACTACAGAAACGATCACACGAT
GACTTTGTTGATATGGACTATGAGATGGACACAAATGAAACAGAATTGCTGCTGCAACAA
ATTGGAAAGAATTTTTCAACTACAGATTCTCAACGAATTTTGGCCGAAAGCATAATAAAT
CTATCAAAACTGCAGCAACAACAGCACTAA
>g3849.t10 Gene=g3849 Length=529
MDNNILNNDWLDSILSDELLNAADFGGQDDIFTNELENAIFVDDNFNEPIFSSAASDSGL
SSDNLDFSCLPSPESESNNSYNEKKPVKANAKSQRQQQQQKEAIPIQKRGTRNSTKNHRN
SSLTKTSNNNNLKKEDSKNNQSKNGINKSRSIIVPVTSQNIKEIRSIKIVNSGSSQLKSA
NIKAVAANLLQKSKQGLLQKNILIPKQDIEDDANMLNFDEIMHETDEMIAAHEENDDENE
DDDDISSSESCSSGYPKLVLTNEEKRLLAKEGITLPSSYPLTKQEERELKRIRRKIRNKI
SAQDSRKRKKEYIDGLEERVKQCSEENHILLKRIKVLQSQNYDLMSKMKKLQTLLTKSTG
KTAQPATCLMILLLSMALVAVPNLKLGKQSAQDLVTAFGEQQNRRNLLFDLKSELEDLES
TNFMQTNFVPGEHDYIENVYKYIESNDIPSSQPPEKRSKTLIDYDIDSMDKWELQKRSHD
DFVDMDYEMDTNETELLLQQIGKNFSTTDSQRILAESIINLSKLQQQQH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g3849.t10 | CDD | cd14689 | bZIP_CREB3 | 289 | 349 | 1.14775E-24 |
| 7 | g3849.t10 | Coils | Coil | Coil | 282 | 302 | - |
| 6 | g3849.t10 | Coils | Coil | Coil | 306 | 333 | - |
| 5 | g3849.t10 | Gene3D | G3DSA:1.20.5.170 | - | 290 | 340 | 1.0E-15 |
| 13 | g3849.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 135 | - |
| 14 | g3849.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 151 | - |
| 2 | g3849.t10 | PANTHER | PTHR45996:SF3 | AGAP001464-PB | 23 | 495 | 7.3E-92 |
| 3 | g3849.t10 | PANTHER | PTHR45996 | AGAP001464-PB | 23 | 495 | 7.3E-92 |
| 1 | g3849.t10 | Pfam | PF00170 | bZIP transcription factor | 286 | 348 | 5.7E-15 |
| 9 | g3849.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 362 | - |
| 10 | g3849.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 363 | 381 | - |
| 8 | g3849.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 382 | 529 | - |
| 15 | g3849.t10 | ProSiteProfiles | PS50217 | Basic-leucine zipper (bZIP) domain profile. | 288 | 351 | 11.45 |
| 12 | g3849.t10 | SMART | SM00338 | brlzneu | 286 | 350 | 3.3E-18 |
| 4 | g3849.t10 | SUPERFAMILY | SSF57959 | Leucine zipper domain | 289 | 347 | 1.69E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K09048 (cyclic AMP-responsive element-binding protein 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
