Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cyclic AMP-responsive element-binding protein 3-like protein 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3849 g3849.t13 TSS g3849.t13 28352135 28352135
chr_3 g3849 g3849.t13 isoform g3849.t13 28352944 28354530
chr_3 g3849 g3849.t13 exon g3849.t13.exon1 28352944 28353274
chr_3 g3849 g3849.t13 exon g3849.t13.exon2 28353344 28354530
chr_3 g3849 g3849.t13 cds g3849.t13.CDS1 28353604 28354530
chr_3 g3849 g3849.t13 TTS g3849.t13 28354712 28354712

Sequences

>g3849.t13 Gene=g3849 Length=1518
ATAGCGGATTGTCAAGTGATAATTTAGATTTGTAAGTTTGTTATCCGGTGATGAAATATG
TGAAAATTTTATATACGTGTAAATTTTGCTTTATGTAGGGATATAAACAATGATTTTGAT
TTATTAAGCTCATGTTTACCATCTCCTGAAAGTGAGAGCAACAACAGTTATAATGAGAAA
AAACCCGTAAAAGCTAATGCTAAATCTCAGCGCCAACAACAACAACAAAAAGAAGCCATA
CCTATACAAAAGCGTGGCACAAGAAACAGTACTAAGAACCATAGAAACAGTTCGTTGACG
AAAACAAGTAATAACAACAACTTGAAGAAAGAAGACTCTAAAAACAATCAAAGCAAAAAT
GGAATTAATAAATCACGTTCAATTATTGTACCGGTCACATCACAAAACATCAAAGAGATT
CGCTCTATAAAAATTGTCAACTCTGGATCTTCACAATTGAAATCAGCAAATATAAAAGCA
GTCGCAGCAAATCTTTTACAGAAATCAAAACAAGGTCTTTTACAAAAGAATATCCTTATT
CCAAAACAAGATATTGAGGATGATGCAAATATGTTAAATTTCGACGAAATAATGCATGAA
ACTGATGAAATGATTGCTGCACATGAAGAAAATGATGATGAAAACGAAGATGACGATGAC
ATTTCCTCATCAGAAAGTTGCTCTTCGGGCTATCCAAAGCTGGTGCTAACAAATGAAGAG
AAACGTCTCCTTGCAAAAGAAGGAATAACATTACCGTCAAGTTACCCACTTACAAAACAA
GAAGAGCGAGAGCTCAAACGTATTCGTCGTAAAATTCGCAACAAGATTTCTGCACAGGAT
TCACGTAAACGCAAGAAGGAATATATTGATGGTTTAGAAGAGCGTGTCAAACAGTGCTCA
GAAGAGAATCACATTTTATTGAAAAGAATTAAAGTATTGCAATCACAAAATTATGACCTT
ATGTCAAAAATGAAAAAGTTACAGACATTACTTACAAAGAGTACAGGCAAGACAGCGCAA
CCTGCAACATGTCTAATGATTTTGCTTTTATCTATGGCACTTGTTGCTGTACCAAACTTG
AAACTTGGCAAACAGAGTGCACAAGATTTAGTTACTGCATTTGGTGAACAACAAAATCGA
CGTAATTTGTTATTTGACCTTAAATCTGAATTAGAGGATTTGGAGTCAACAAATTTTATG
CAAACAAACTTTGTTCCTGGCGAACACGATTACATCGAGAATGTCTACAAATATATCGAG
TCAAATGACATTCCATCTTCACAGCCACCAGAAAAGAGATCGAAAACATTAATTGATTAT
GATATTGATTCTATGGATAAATGGGAACTACAGAAACGATCACACGATGACTTTGTTGAT
ATGGACTATGAGATGGACACAAATGAAACAGAATTGCTGCTGCAACAAATTGGAAAGAAT
TTTTCAACTACAGATTCTCAACGAATTTTGGCCGAAAGCATAATAAATCTATCAAAACTG
CAGCAACAACAGCACTAA

>g3849.t13 Gene=g3849 Length=308
MHETDEMIAAHEENDDENEDDDDISSSESCSSGYPKLVLTNEEKRLLAKEGITLPSSYPL
TKQEERELKRIRRKIRNKISAQDSRKRKKEYIDGLEERVKQCSEENHILLKRIKVLQSQN
YDLMSKMKKLQTLLTKSTGKTAQPATCLMILLLSMALVAVPNLKLGKQSAQDLVTAFGEQ
QNRRNLLFDLKSELEDLESTNFMQTNFVPGEHDYIENVYKYIESNDIPSSQPPEKRSKTL
IDYDIDSMDKWELQKRSHDDFVDMDYEMDTNETELLLQQIGKNFSTTDSQRILAESIINL
SKLQQQQH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g3849.t13 CDD cd14689 bZIP_CREB3 68 128 7.11657E-25
10 g3849.t13 Coils Coil Coil 61 81 -
9 g3849.t13 Coils Coil Coil 85 112 -
8 g3849.t13 Gene3D G3DSA:1.20.5.170 - 69 119 4.7E-16
17 g3849.t13 MobiDBLite mobidb-lite consensus disorder prediction 1 36 -
16 g3849.t13 MobiDBLite mobidb-lite consensus disorder prediction 10 26 -
2 g3849.t13 PANTHER PTHR45996:SF3 AGAP001464-PB 29 274 1.7E-83
3 g3849.t13 PANTHER PTHR45996 AGAP001464-PB 29 274 1.7E-83
4 g3849.t13 PRINTS PR00043 Jun transcription factor signature 54 74 5.6E-5
6 g3849.t13 PRINTS PR00043 Jun transcription factor signature 76 92 5.6E-5
5 g3849.t13 PRINTS PR00043 Jun transcription factor signature 94 106 5.6E-5
1 g3849.t13 Pfam PF00170 bZIP transcription factor 65 127 2.4E-15
12 g3849.t13 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 141 -
13 g3849.t13 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 142 160 -
11 g3849.t13 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 161 308 -
18 g3849.t13 ProSiteProfiles PS50217 Basic-leucine zipper (bZIP) domain profile. 67 130 11.45
15 g3849.t13 SMART SM00338 brlzneu 65 129 3.3E-18
7 g3849.t13 SUPERFAMILY SSF57959 Leucine zipper domain 68 126 7.45E-14

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003677 DNA binding MF
GO:0006355 regulation of transcription, DNA-templated BP
GO:0003700 DNA-binding transcription factor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values