Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cyclic AMP-responsive element-binding protein 3-like protein 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3849 g3849.t15 TSS g3849.t15 28352830 28352830
chr_3 g3849 g3849.t15 isoform g3849.t15 28353347 28353980
chr_3 g3849 g3849.t15 exon g3849.t15.exon1 28353347 28353980
chr_3 g3849 g3849.t15 cds g3849.t15.CDS1 28353583 28353978
chr_3 g3849 g3849.t15 TTS g3849.t15 28354712 28354712

Sequences

>g3849.t15 Gene=g3849 Length=634
ACTCTAAAAACAATCAAAGCAAAAATGGAATTAATAAATCACGTTCAATTATTGTACCGG
TCACATCACAAAACATCAAAGAGATTCGCTCTATAAAAATTGTCAACTCTGGATCTTCAC
AATTGAAATCAGCAAATATAAAAGCAGTCGCAGCAAATCTTTTACAGAAATCAAAACAAG
GTCTTTTACAAAAGAATATCCTTATTCCAAAACAAGATATTGAGGATGATGCAAATATGT
TAAATTTCGACGAAATAATGCATGAAACTGATGAAATGATTGCTGCACATGAAGAAAATG
ATGATGAAAACGAAGATGACGATGACATTTCCTCATCAGAAAGTTGCTCTTCGGGCTATC
CAAAGCTGGTGCTAACAAATGAAGAGAAACGTCTCCTTGCAAAAGAAGGAATAACATTAC
CGTCAAGTTACCCACTTACAAAACAAGAAGAGCGAGAGCTCAAACGTATTCGTCGTAAAA
TTCGCAACAAGATTTCTGCACAGGATTCACGTAAACGCAAGAAGGAATATATTGATGGTT
TAGAAGAGCGTGTCAAACAGTGCTCAGAAGAGAATCACATTTTATTGAAAAGAATTAAAG
TATTGCAATCACAAAATTATGACCTTATGTCAAA

>g3849.t15 Gene=g3849 Length=132
MLNFDEIMHETDEMIAAHEENDDENEDDDDISSSESCSSGYPKLVLTNEEKRLLAKEGIT
LPSSYPLTKQEERELKRIRRKIRNKISAQDSRKRKKEYIDGLEERVKQCSEENHILLKRI
KVLQSQNYDLMS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g3849.t15 CDD cd14689 bZIP_CREB3 75 132 4.21828E-23
8 g3849.t15 Coils Coil Coil 68 88 -
9 g3849.t15 Coils Coil Coil 92 119 -
7 g3849.t15 Gene3D G3DSA:1.20.5.170 - 76 131 4.4E-17
13 g3849.t15 MobiDBLite mobidb-lite consensus disorder prediction 1 42 -
12 g3849.t15 MobiDBLite mobidb-lite consensus disorder prediction 17 33 -
2 g3849.t15 PANTHER PTHR45996 AGAP001464-PB 34 132 3.0E-56
5 g3849.t15 PRINTS PR00043 Jun transcription factor signature 61 81 8.5E-6
4 g3849.t15 PRINTS PR00043 Jun transcription factor signature 83 99 8.5E-6
3 g3849.t15 PRINTS PR00043 Jun transcription factor signature 101 113 8.5E-6
1 g3849.t15 Pfam PF00170 bZIP transcription factor 72 130 2.0E-16
14 g3849.t15 ProSiteProfiles PS50217 Basic-leucine zipper (bZIP) domain profile. 74 132 11.197
11 g3849.t15 SMART SM00338 brlzneu 72 132 2.4E-13
6 g3849.t15 SUPERFAMILY SSF57959 Leucine zipper domain 75 131 7.2E-15

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003677 DNA binding MF
GO:0006355 regulation of transcription, DNA-templated BP
GO:0003700 DNA-binding transcription factor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values