Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cyclic AMP-responsive element-binding protein 3-like protein 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3849 g3849.t2 TSS g3849.t2 28352135 28352135
chr_3 g3849 g3849.t2 isoform g3849.t2 28352284 28354530
chr_3 g3849 g3849.t2 exon g3849.t2.exon1 28352284 28352301
chr_3 g3849 g3849.t2 cds g3849.t2.CDS1 28352284 28352301
chr_3 g3849 g3849.t2 exon g3849.t2.exon2 28352793 28352974
chr_3 g3849 g3849.t2 cds g3849.t2.CDS2 28352793 28352974
chr_3 g3849 g3849.t2 exon g3849.t2.exon3 28353042 28353274
chr_3 g3849 g3849.t2 cds g3849.t2.CDS3 28353042 28353274
chr_3 g3849 g3849.t2 exon g3849.t2.exon4 28353344 28354530
chr_3 g3849 g3849.t2 cds g3849.t2.CDS4 28353344 28354530
chr_3 g3849 g3849.t2 TTS g3849.t2 28354712 28354712

Sequences

>g3849.t2 Gene=g3849 Length=1620
ATGGATAATAATATTTTGAATAATGACTGGCTAGATTCGATTTTGTCGGATGAGTTATTG
AATGCAGCAGATTTTGGAGGACAAGATGATATTTTCACAAATGAACTCGAGAATGCTATA
TTTGTAGATGATAATTTTAATGAGCCTATTTTTTCGTCTGCCGCATCAGATAGCGGATTG
TCAAGTGATAATTTAGATTTGGATATAAACAATGATTTTGATTTATTAAGCTCATGTTTA
CCATCTCCTGAAAGTGAGAGCAACAACAGTTATAATGAGAAAAAACCCGTAAAAGCTAAT
GCTAAATCTCAGCGCCAACAACAACAACAAAAAGAAGCCATACCTATACAAAAGCGTGGC
ACAAGAAACAGTACTAAGAACCATAGAAACAGTTCGTTGACGAAAACAAGTAATAACAAC
AACTTGAAGAAAGAAGACTCTAAAAACAATCAAAGCAAAAATGGAATTAATAAATCACGT
TCAATTATTGTACCGGTCACATCACAAAACATCAAAGAGATTCGCTCTATAAAAATTGTC
AACTCTGGATCTTCACAATTGAAATCAGCAAATATAAAAGCAGTCGCAGCAAATCTTTTA
CAGAAATCAAAACAAGGTCTTTTACAAAAGAATATCCTTATTCCAAAACAAGATATTGAG
GATGATGCAAATATGTTAAATTTCGACGAAATAATGCATGAAACTGATGAAATGATTGCT
GCACATGAAGAAAATGATGATGAAAACGAAGATGACGATGACATTTCCTCATCAGAAAGT
TGCTCTTCGGGCTATCCAAAGCTGGTGCTAACAAATGAAGAGAAACGTCTCCTTGCAAAA
GAAGGAATAACATTACCGTCAAGTTACCCACTTACAAAACAAGAAGAGCGAGAGCTCAAA
CGTATTCGTCGTAAAATTCGCAACAAGATTTCTGCACAGGATTCACGTAAACGCAAGAAG
GAATATATTGATGGTTTAGAAGAGCGTGTCAAACAGTGCTCAGAAGAGAATCACATTTTA
TTGAAAAGAATTAAAGTATTGCAATCACAAAATTATGACCTTATGTCAAAAATGAAAAAG
TTACAGACATTACTTACAAAGAGTACAGGCAAGACAGCGCAACCTGCAACATGTCTAATG
ATTTTGCTTTTATCTATGGCACTTGTTGCTGTACCAAACTTGAAACTTGGCAAACAGAGT
GCACAAGATTTAGTTACTGCATTTGGTGAACAACAAAATCGACGTAATTTGTTATTTGAC
CTTAAATCTGAATTAGAGGATTTGGAGTCAACAAATTTTATGCAAACAAACTTTGTTCCT
GGCGAACACGATTACATCGAGAATGTCTACAAATATATCGAGTCAAATGACATTCCATCT
TCACAGCCACCAGAAAAGAGATCGAAAACATTAATTGATTATGATATTGATTCTATGGAT
AAATGGGAACTACAGAAACGATCACACGATGACTTTGTTGATATGGACTATGAGATGGAC
ACAAATGAAACAGAATTGCTGCTGCAACAAATTGGAAAGAATTTTTCAACTACAGATTCT
CAACGAATTTTGGCCGAAAGCATAATAAATCTATCAAAACTGCAGCAACAACAGCACTAA

>g3849.t2 Gene=g3849 Length=539
MDNNILNNDWLDSILSDELLNAADFGGQDDIFTNELENAIFVDDNFNEPIFSSAASDSGL
SSDNLDLDINNDFDLLSSCLPSPESESNNSYNEKKPVKANAKSQRQQQQQKEAIPIQKRG
TRNSTKNHRNSSLTKTSNNNNLKKEDSKNNQSKNGINKSRSIIVPVTSQNIKEIRSIKIV
NSGSSQLKSANIKAVAANLLQKSKQGLLQKNILIPKQDIEDDANMLNFDEIMHETDEMIA
AHEENDDENEDDDDISSSESCSSGYPKLVLTNEEKRLLAKEGITLPSSYPLTKQEERELK
RIRRKIRNKISAQDSRKRKKEYIDGLEERVKQCSEENHILLKRIKVLQSQNYDLMSKMKK
LQTLLTKSTGKTAQPATCLMILLLSMALVAVPNLKLGKQSAQDLVTAFGEQQNRRNLLFD
LKSELEDLESTNFMQTNFVPGEHDYIENVYKYIESNDIPSSQPPEKRSKTLIDYDIDSMD
KWELQKRSHDDFVDMDYEMDTNETELLLQQIGKNFSTTDSQRILAESIINLSKLQQQQH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g3849.t2 CDD cd14689 bZIP_CREB3 299 359 9.97384E-25
6 g3849.t2 Coils Coil Coil 292 312 -
7 g3849.t2 Coils Coil Coil 316 343 -
5 g3849.t2 Gene3D G3DSA:1.20.5.170 - 300 350 1.0E-15
13 g3849.t2 MobiDBLite mobidb-lite consensus disorder prediction 81 161 -
14 g3849.t2 MobiDBLite mobidb-lite consensus disorder prediction 81 145 -
2 g3849.t2 PANTHER PTHR45996:SF3 AGAP001464-PB 23 505 1.1E-91
3 g3849.t2 PANTHER PTHR45996 AGAP001464-PB 23 505 1.1E-91
1 g3849.t2 Pfam PF00170 bZIP transcription factor 296 358 5.9E-15
9 g3849.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 372 -
10 g3849.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 373 391 -
8 g3849.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 392 539 -
15 g3849.t2 ProSiteProfiles PS50217 Basic-leucine zipper (bZIP) domain profile. 298 361 11.45
12 g3849.t2 SMART SM00338 brlzneu 296 360 3.3E-18
4 g3849.t2 SUPERFAMILY SSF57959 Leucine zipper domain 299 357 1.69E-13

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006355 regulation of transcription, DNA-templated BP
GO:0003700 DNA-binding transcription factor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values