General information for g3849.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3849 is located on chr_3: 28354530..28356720 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3849 | g3849.t6 | TSS | g3849.t6 | 28352135 | 28352135 |
| chr_3 | g3849 | g3849.t6 | isoform | g3849.t6 | 28352284 | 28353652 |
| chr_3 | g3849 | g3849.t6 | exon | g3849.t6.exon1 | 28352284 | 28353094 |
| chr_3 | g3849 | g3849.t6 | exon | g3849.t6.exon2 | 28353188 | 28353652 |
| chr_3 | g3849 | g3849.t6 | cds | g3849.t6.CDS1 | 28353325 | 28353651 |
| chr_3 | g3849 | g3849.t6 | TTS | g3849.t6 | NA | NA |
Sequences
>g3849.t6 Gene=g3849 Length=1276
ATGGATAATAATATTTTGGTAAATATCTATGCTTGCATTTATTTTTCTAGAAAAATTCTG
CTCTTATCTCTCATCTTTACGTCCTCTTGCTCTTATCAGTTCGATTTCACAAATTAAAGT
CAATTTTTCTTTTAAAAAAGCAGACTTCTTTGTAAGAAAACGTGTGATAATGGCTTTCTT
TAAAAAGTGCAAAAAAAGTGAGAGGAATGATAGAAAATATGTTTTAAAGAAAAAATTGCT
TGCGTTAGCAAGCAAATTTGATTGAGGTCTTCTGCATGATTCATAATAAATGTTACGTTA
TATTTATAATTATTTACATAAAATGATGAAATTTTGAAATACCTACATACATACTCTCTC
ACTTGAAATGCGCAAAATATGTTTTTGAGTATATGACATTCATCTCTCAATTCATAAGCA
AAACACTTGTGTTTATTTATGGATGTACAATATGGAATTCTTTATTCTCTTTTTCTTTCA
TTCTCATGTTCTCATTTTTTTCCAATTAGAATAATGACTGGCTAGATTCGATTTTGTCGG
ATGAGTTATTGAATGCAGCAGATTTTGGAGGACAAGATGATATTTTCACAAATGAACTCG
AGAATGCTATATTTGTAGATGATAATTTTAATGAGCCTATTTTTTCGTCTGCCGCATCAG
ATAGCGGATTGTCAAGTGATAATTTAGATTTGTAAGTTTGTTATCCGGTGATGAAATATG
TGAAAATTTTATATACGTGTAAATTTTGCTTTATGTAGGGATATAAACAATGATTTTGAT
TTATTAAGCTCATGTTTACCATCTCCTGAAATACAAAAGCGTGGCACAAGAAACAGTACT
AAGAACCATAGAAACAGTTCGTTGACGAAAACAAGTAATAACAACAACTTGAAGAAAGGT
GAGTGTATTACATCTTCTTCTTATTCTTGTTTTTGTATCATCTAATGAATGTTAAAATTT
GTTATAGAAGACTCTAAAAACAATCAAAGCAAAAATGGAATTAATAAATCACGTTCAATT
ATTGTACCGGTCACATCACAAAACATCAAAGAGATTCGCTCTATAAAAATTGTCAACTCT
GGATCTTCACAATTGAAATCAGCAAATATAAAAGCAGTCGCAGCAAATCTTTTACAGAAA
TCAAAACAAGGTCTTTTACAAAAGAATATCCTTATTCCAAAACAAGATATTGAGGATGAT
GCAAATATGTTAAATTTCGACGAAATAATGCATGAAACTGATGAAATGATTGCTGCACAT
GAAGAAAATGATGATG
>g3849.t6 Gene=g3849 Length=109
MLKFVIEDSKNNQSKNGINKSRSIIVPVTSQNIKEIRSIKIVNSGSSQLKSANIKAVAAN
LLQKSKQGLLQKNILIPKQDIEDDANMLNFDEIMHETDEMIAAHEENDD
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
