Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cyclic AMP-responsive element-binding protein 3-like protein 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3849 g3849.t7 TSS g3849.t7 28352135 28352135
chr_3 g3849 g3849.t7 isoform g3849.t7 28352284 28353980
chr_3 g3849 g3849.t7 exon g3849.t7.exon1 28352284 28352301
chr_3 g3849 g3849.t7 exon g3849.t7.exon2 28352944 28352974
chr_3 g3849 g3849.t7 exon g3849.t7.exon3 28353042 28353274
chr_3 g3849 g3849.t7 exon g3849.t7.exon4 28353344 28353980
chr_3 g3849 g3849.t7 cds g3849.t7.CDS1 28353604 28353978
chr_3 g3849 g3849.t7 TTS g3849.t7 28354712 28354712

Sequences

>g3849.t7 Gene=g3849 Length=919
ATGGATAATAATATTTTGATAGCGGATTGTCAAGTGATAATTTAGATTTGGATATAAACA
ATGATTTTGATTTATTAAGCTCATGTTTACCATCTCCTGAAAGTGAGAGCAACAACAGTT
ATAATGAGAAAAAACCCGTAAAAGCTAATGCTAAATCTCAGCGCCAACAACAACAACAAA
AAGAAGCCATACCTATACAAAAGCGTGGCACAAGAAACAGTACTAAGAACCATAGAAACA
GTTCGTTGACGAAAACAAGTAATAACAACAACTTGAAGAAAGAAGACTCTAAAAACAATC
AAAGCAAAAATGGAATTAATAAATCACGTTCAATTATTGTACCGGTCACATCACAAAACA
TCAAAGAGATTCGCTCTATAAAAATTGTCAACTCTGGATCTTCACAATTGAAATCAGCAA
ATATAAAAGCAGTCGCAGCAAATCTTTTACAGAAATCAAAACAAGGTCTTTTACAAAAGA
ATATCCTTATTCCAAAACAAGATATTGAGGATGATGCAAATATGTTAAATTTCGACGAAA
TAATGCATGAAACTGATGAAATGATTGCTGCACATGAAGAAAATGATGATGAAAACGAAG
ATGACGATGACATTTCCTCATCAGAAAGTTGCTCTTCGGGCTATCCAAAGCTGGTGCTAA
CAAATGAAGAGAAACGTCTCCTTGCAAAAGAAGGAATAACATTACCGTCAAGTTACCCAC
TTACAAAACAAGAAGAGCGAGAGCTCAAACGTATTCGTCGTAAAATTCGCAACAAGATTT
CTGCACAGGATTCACGTAAACGCAAGAAGGAATATATTGATGGTTTAGAAGAGCGTGTCA
AACAGTGCTCAGAAGAGAATCACATTTTATTGAAAAGAATTAAAGTATTGCAATCACAAA
ATTATGACCTTATGTCAAA

>g3849.t7 Gene=g3849 Length=125
MHETDEMIAAHEENDDENEDDDDISSSESCSSGYPKLVLTNEEKRLLAKEGITLPSSYPL
TKQEERELKRIRRKIRNKISAQDSRKRKKEYIDGLEERVKQCSEENHILLKRIKVLQSQN
YDLMS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g3849.t7 CDD cd14689 bZIP_CREB3 68 125 2.27205E-22
10 g3849.t7 Coils Coil Coil 61 81 -
9 g3849.t7 Coils Coil Coil 85 112 -
8 g3849.t7 Gene3D G3DSA:1.20.5.170 - 69 124 3.9E-17
14 g3849.t7 MobiDBLite mobidb-lite consensus disorder prediction 1 36 -
13 g3849.t7 MobiDBLite mobidb-lite consensus disorder prediction 10 26 -
2 g3849.t7 PANTHER PTHR45996:SF3 AGAP001464-PB 29 125 6.3E-56
3 g3849.t7 PANTHER PTHR45996 AGAP001464-PB 29 125 6.3E-56
4 g3849.t7 PRINTS PR00043 Jun transcription factor signature 54 74 7.7E-6
6 g3849.t7 PRINTS PR00043 Jun transcription factor signature 76 92 7.7E-6
5 g3849.t7 PRINTS PR00043 Jun transcription factor signature 94 106 7.7E-6
1 g3849.t7 Pfam PF00170 bZIP transcription factor 65 123 1.7E-16
15 g3849.t7 ProSiteProfiles PS50217 Basic-leucine zipper (bZIP) domain profile. 67 125 11.197
12 g3849.t7 SMART SM00338 brlzneu 65 125 2.4E-13
7 g3849.t7 SUPERFAMILY SSF57959 Leucine zipper domain 68 124 7.87E-15

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003677 DNA binding MF
GO:0006355 regulation of transcription, DNA-templated BP
GO:0003700 DNA-binding transcription factor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values