General information for g3856.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been not been annotated.
Parent gene
- The parent gene g3856 is located on chr_3: 28390686..28391839 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3856 | g3856.t1 | TTS | g3856.t1 | 28390612 | 28390612 |
| chr_3 | g3856 | g3856.t1 | isoform | g3856.t1 | 28390686 | 28391839 |
| chr_3 | g3856 | g3856.t1 | exon | g3856.t1.exon1 | 28390686 | 28390780 |
| chr_3 | g3856 | g3856.t1 | cds | g3856.t1.CDS1 | 28390686 | 28390780 |
| chr_3 | g3856 | g3856.t1 | exon | g3856.t1.exon2 | 28391683 | 28391839 |
| chr_3 | g3856 | g3856.t1 | cds | g3856.t1.CDS2 | 28391683 | 28391839 |
| chr_3 | g3856 | g3856.t1 | TSS | g3856.t1 | 28392126 | 28392126 |
Sequences
>g3856.t1 Gene=g3856 Length=252
ATGGGAGGACAACATTTTGGAGAATTAGCCAAAGTTCGTGGCATTGTTATCCACAAATTG
TCACCTTATGAGCAAAAAGCATTCGCTGGAGCAATTAGTAAAGGAGTACCAAATACATTC
AGAAGAATTAGTTCACAAATTTTCAGAGTTGTGCCTCCCTTTATCGTCGGATATTTCGTA
TACAACTATGTTGAGGGACTTCATGATTCATACTTGCGCAAGAACCCAAAAGACTTCGAG
AATGATGTTTAA
>g3856.t1 Gene=g3856 Length=83
MGGQHFGELAKVRGIVIHKLSPYEQKAFAGAISKGVPNTFRRISSQIFRVVPPFIVGYFV
YNYVEGLHDSYLRKNPKDFENDV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g3856.t1 | Gene3D | G3DSA:1.20.5.210 | - | 3 | 83 | 0 |
| 2 | g3856.t1 | PANTHER | PTHR12119 | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C | 1 | 82 | 0 |
| 1 | g3856.t1 | Pfam | PF02939 | UcrQ family | 5 | 80 | 0 |
| 3 | g3856.t1 | SUPERFAMILY | SSF81508 | Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 4 | 82 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008121 | ubiquinol-cytochrome-c reductase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00418 (ubiquinol-cytochrome c reductase subunit 8)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
