Gene loci information

Transcript annotation

  • This transcript has been annotated as Dual specificity protein phosphatase Mpk3.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3858 g3858.t2 TSS g3858.t2 28392189 28392189
chr_3 g3858 g3858.t2 isoform g3858.t2 28392992 28395521
chr_3 g3858 g3858.t2 exon g3858.t2.exon1 28392992 28393169
chr_3 g3858 g3858.t2 cds g3858.t2.CDS1 28392992 28393169
chr_3 g3858 g3858.t2 exon g3858.t2.exon2 28393278 28393463
chr_3 g3858 g3858.t2 cds g3858.t2.CDS2 28393278 28393463
chr_3 g3858 g3858.t2 exon g3858.t2.exon3 28394416 28394515
chr_3 g3858 g3858.t2 cds g3858.t2.CDS3 28394416 28394515
chr_3 g3858 g3858.t2 exon g3858.t2.exon4 28395137 28395521
chr_3 g3858 g3858.t2 cds g3858.t2.CDS4 28395137 28395521
chr_3 g3858 g3858.t2 TTS g3858.t2 NA NA

Sequences

>g3858.t2 Gene=g3858 Length=849
ATGCCTGATACAGAAATTGAACTAATTGACAAAAGTAACTTAATCACAGAACTTCGCAGC
TGTAAAAAAGAAATCATAATTCTCGATTGTCGTTCTCCAAATGACTATGCCATCTCTCAT
ATTCTCAATGCGACAAACATTACTCTTCCAACGATAATGCTGCGTAGACTTAAAGAAGGT
AAAACTGACTTATTCAGTACAATAAAATGCAAGGATCTAAAGAACAGAATTCTTGGAATG
AACGTTCAAACACTCTTCGTTTTATATCATAATGGATCAACATTTCCTGATGTCATGCAA
GTTTTATCGCGAAAGCTTAAGGCTGAGTTCAACGATAAGAAAATTCGTGTTGTATGTTTA
GCTGATGGATTTATGAATTTTCAAGCATCTTTTCCCGAGTGGTGTCAAGATGAGCGTTCT
AATATGCAATCAAATTCCAGTTCTGAACAATTAATGGGTCTGAGATCTCTGCGAATCTCC
ACGCCATTATCAGATTCGGCGTGCAGTAGCTCTACTGAGTCATCTGATGGCGAAAGCGGA
TCAAATTATCCAATTGAACCTTATGGCGGTGAACCGATAGAAATTCTTCCAGGTTTATTT
TTGGGTAATGCAGCGCACAGTGAAGACATTACAAAAATCCAAAAATATAACATTAGACAC
ATTCTTAATGTATCGACATTACCAAATGTGTTTCAAGACACAGGCAAAATTGAATATCTT
CAAATTCCAATAACTGATCATTGGTCTCAAGATTTGAGTATACATTTTCCTGCTGCCATA
AAATTCATTGAAGAAGCAAAGACTAAAAATGTCTCATGTTTGGTTCATTGTCTAGCCGGT
GTTAGTCGA

>g3858.t2 Gene=g3858 Length=283
MPDTEIELIDKSNLITELRSCKKEIIILDCRSPNDYAISHILNATNITLPTIMLRRLKEG
KTDLFSTIKCKDLKNRILGMNVQTLFVLYHNGSTFPDVMQVLSRKLKAEFNDKKIRVVCL
ADGFMNFQASFPEWCQDERSNMQSNSSSEQLMGLRSLRISTPLSDSACSSSTESSDGESG
SNYPIEPYGGEPIEILPGLFLGNAAHSEDITKIQKYNIRHILNVSTLPNVFQDTGKIEYL
QIPITDHWSQDLSIHFPAAIKFIEEAKTKNVSCLVHCLAGVSR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g3858.t2 CDD cd01446 DSP_MapKP 8 135 0.0000000
17 g3858.t2 Gene3D G3DSA:3.40.250.10 Oxidized Rhodanese 4 141 0.0000000
16 g3858.t2 Gene3D G3DSA:3.90.190.10 Protein tyrosine phosphatase superfamily 178 283 0.0000000
3 g3858.t2 PANTHER PTHR10159 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1 283 0.0000000
4 g3858.t2 PANTHER PTHR10159:SF517 DUAL SPECIFICITY PROTEIN PHOSPHATASE MPK3 1 283 0.0000000
9 g3858.t2 PRINTS PR01764 MAP kinase phosphatase signature 26 36 0.0000000
12 g3858.t2 PRINTS PR01764 MAP kinase phosphatase signature 52 64 0.0000000
8 g3858.t2 PRINTS PR01908 Atypical dual specificity phosphatase family signature 196 208 0.0000210
6 g3858.t2 PRINTS PR01908 Atypical dual specificity phosphatase family signature 213 224 0.0000210
11 g3858.t2 PRINTS PR01764 MAP kinase phosphatase signature 218 228 0.0000000
5 g3858.t2 PRINTS PR01908 Atypical dual specificity phosphatase family signature 239 248 0.0000210
13 g3858.t2 PRINTS PR01764 MAP kinase phosphatase signature 239 248 0.0000000
7 g3858.t2 PRINTS PR01908 Atypical dual specificity phosphatase family signature 255 266 0.0000210
10 g3858.t2 PRINTS PR01764 MAP kinase phosphatase signature 255 267 0.0000000
2 g3858.t2 Pfam PF00581 Rhodanese-like domain 22 129 0.0000003
1 g3858.t2 Pfam PF00782 Dual specificity phosphatase, catalytic domain 199 283 0.0000000
23 g3858.t2 ProSiteProfiles PS50206 Rhodanese domain profile. 21 136 11.2970000
21 g3858.t2 ProSiteProfiles PS50054 Dual specificity protein phosphatase family profile. 191 283 24.8350000
22 g3858.t2 ProSiteProfiles PS50056 Tyrosine specific protein phosphatases family profile. 254 283 8.6180000
19 g3858.t2 SMART SM00450 rhod_4 11 133 0.0000000
20 g3858.t2 SMART SM00195 dsp_5 191 283 0.0001400
15 g3858.t2 SUPERFAMILY SSF52821 Rhodanese/Cell cycle control phosphatase 4 137 0.0000000
14 g3858.t2 SUPERFAMILY SSF52799 (Phosphotyrosine protein) phosphatases II 186 283 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity MF
GO:0008138 protein tyrosine/serine/threonine phosphatase activity MF
GO:0006470 protein dephosphorylation BP
GO:0016311 dephosphorylation BP
GO:0016791 phosphatase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values