Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable enoyl-CoA hydratase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3891 g3891.t11 TTS g3891.t11 28634277 28634277
chr_3 g3891 g3891.t11 isoform g3891.t11 28634381 28635794
chr_3 g3891 g3891.t11 exon g3891.t11.exon1 28634381 28634847
chr_3 g3891 g3891.t11 cds g3891.t11.CDS1 28634381 28634847
chr_3 g3891 g3891.t11 exon g3891.t11.exon2 28634912 28635229
chr_3 g3891 g3891.t11 cds g3891.t11.CDS2 28634912 28635229
chr_3 g3891 g3891.t11 exon g3891.t11.exon3 28635315 28635453
chr_3 g3891 g3891.t11 cds g3891.t11.CDS3 28635315 28635396
chr_3 g3891 g3891.t11 exon g3891.t11.exon4 28635716 28635794
chr_3 g3891 g3891.t11 TSS g3891.t11 NA NA

Sequences

>g3891.t11 Gene=g3891 Length=1003
TAATAATTTCTTATAAATGTTTATTTAACGTCAATAATTCAAGTAATAATAAAAAGAAAA
AAAAAAATATTTTGAACATATATCGGCGTCAGCAGATCGGCAATTTTTTTAAAAACAGTG
TAGAATCACTCTGATCATGGCTTCAATCACAAAGATCGTATCATCATTATCACGTGCACC
TGCATTAAAGCAACAATACAGACTTTTCTGTGCGGCAGCAAACAAATATGAATTTATTGT
AAAAGATGTTGCTGGCGAGAAAAAGAATGTTGGTTTGATTACATTGAATCGACCAAAAGC
TCTTAATGCTTTAAATAAAGGTTTAATGACAGAAGTTGCCAGAGCATTGAATGAATTTGA
TTCTGATAAATCTATTGGTGCAATTGTCATAACTGGAAATGAGAAAGCTTTTGCTGCCGG
TGCCGATATCAAAGAAATGCAGGGTAACACATATGCCGATTGCATTCTTAATAACTTTTT
AGCTGATTGGACAAAAGTTGCAAGCACAAAAAAACCAGTCATTGCAGCAGTTAATGGATA
TGCTCTTGGAGGCGGTTGTGAATTAGCAATGATGTGCGATATAATTTATGCTGGAGATAA
AGCTCGTTTCGGTCAACCTGAGATCAATATTGGAACAATTCCCGGAGCTGGCGGTACACA
ACGTTTAACACGCGTGATTGGAAAATCAAAGGCAATGGAAATGTGTTTGACAGGAAACAT
GATTACAGCTGAAGAAGCTGAAAAGTCAGGTTTAGTAAGCAAAGTGTTTCCAGCTGATCA
GTTAGTCAAAGAGGCAGTTAAACTCGGTGAAAAAATTAGTGCTCAATCGCCATTGACAGT
TGCTCTTGCAAAAGAAGCCGTTAATGTTGCATATGAGAGCACACTTGCTGAAGGTTTGAG
ATTTGAGAGAAGATACTTCCACGCAACATTCTCAACCAAAGATCAGAAAGAAGGAATGTT
GGCATTTATTGAGAAACGTGCACCTAACTTTACCAGCGAATAA

>g3891.t11 Gene=g3891 Length=288
MASITKIVSSLSRAPALKQQYRLFCAAANKYEFIVKDVAGEKKNVGLITLNRPKALNALN
KGLMTEVARALNEFDSDKSIGAIVITGNEKAFAAGADIKEMQGNTYADCILNNFLADWTK
VASTKKPVIAAVNGYALGGGCELAMMCDIIYAGDKARFGQPEINIGTIPGAGGTQRLTRV
IGKSKAMEMCLTGNMITAEEAEKSGLVSKVFPADQLVKEAVKLGEKISAQSPLTVALAKE
AVNVAYESTLAEGLRFERRYFHATFSTKDQKEGMLAFIEKRAPNFTSE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g3891.t11 CDD cd06558 crotonase-like 44 227 1.60784E-76
7 g3891.t11 Gene3D G3DSA:3.90.226.10 - 29 230 7.1E-80
6 g3891.t11 Gene3D G3DSA:1.10.12.10 - 231 287 1.2E-26
2 g3891.t11 PANTHER PTHR11941:SF54 ENOYL-COA HYDRATASE, MITOCHONDRIAL 38 283 1.1E-93
3 g3891.t11 PANTHER PTHR11941 ENOYL-COA HYDRATASE-RELATED 38 283 1.1E-93
1 g3891.t11 Pfam PF00378 Enoyl-CoA hydratase/isomerase 41 287 3.2E-92
5 g3891.t11 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 129 149 -
4 g3891.t11 SUPERFAMILY SSF52096 ClpP/crotonase 30 287 6.38E-89

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003824 catalytic activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values