General information for g3891.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable enoyl-CoA hydratase, mitochondrial.
Parent gene
- The parent gene g3891 is located on chr_3: 28634935..28635794 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3891 | g3891.t4 | TTS | g3891.t4 | 28634277 | 28634277 |
| chr_3 | g3891 | g3891.t4 | isoform | g3891.t4 | 28634381 | 28635396 |
| chr_3 | g3891 | g3891.t4 | exon | g3891.t4.exon1 | 28634381 | 28634847 |
| chr_3 | g3891 | g3891.t4 | cds | g3891.t4.CDS1 | 28634381 | 28634815 |
| chr_3 | g3891 | g3891.t4 | exon | g3891.t4.exon2 | 28634938 | 28635229 |
| chr_3 | g3891 | g3891.t4 | exon | g3891.t4.exon3 | 28635315 | 28635396 |
| chr_3 | g3891 | g3891.t4 | TSS | g3891.t4 | 28635461 | 28635461 |
Sequences
>g3891.t4 Gene=g3891 Length=841
ATGGCTTCAATCACAAAGATCGTATCATCATTATCACGTGCACCTGCATTAAAGCAACAA
TACAGACTTTTCTGTGCGGCAGCAAACAAATATGAATTTATTGTAAAAGATGTTGCTGGC
GAGAAAAAGAATGTTGGTTTGATTACATTGAATCGACCAAAAGCTCTTAATGCTTTAAAT
AAAGGTTTAATGACAGAAGTTGCCAGAGCATTGAATGAATTTGATTCTGATAAATCTATT
GGTGCAATTGTCATAACTGGAAATGAGAAAGCTTTTGCTGCCGGTGCCGATATCAAAGAA
ATGCAGGGTAACACATATGCCGATTGCATTCTTAATAACTTTTTAGCTGATTGGACAAAA
GTTGCAAGCACAAAGATATGCTCTTGGAGGCGGTTGTGAATTAGCAATGATGTGCGATAT
AATTTATGCTGGAGATAAAGCTCGTTTCGGTCAACCTGAGATCAATATTGGAACAATTCC
CGGAGCTGGCGGTACACAACGTTTAACACGCGTGATTGGAAAATCAAAGGCAATGGAAAT
GTGTTTGACAGGAAACATGATTACAGCTGAAGAAGCTGAAAAGTCAGGTTTAGTAAGCAA
AGTGTTTCCAGCTGATCAGTTAGTCAAAGAGGCAGTTAAACTCGGTGAAAAAATTAGTGC
TCAATCGCCATTGACAGTTGCTCTTGCAAAAGAAGCCGTTAATGTTGCATATGAGAGCAC
ACTTGCTGAAGGTTTGAGATTTGAGAGAAGATACTTCCACGCAACATTCTCAACCAAAGA
TCAGAAAGAAGGAATGTTGGCATTTATTGAGAAACGTGCACCTAACTTTACCAGCGAATA
A
>g3891.t4 Gene=g3891 Length=144
MMCDIIYAGDKARFGQPEINIGTIPGAGGTQRLTRVIGKSKAMEMCLTGNMITAEEAEKS
GLVSKVFPADQLVKEAVKLGEKISAQSPLTVALAKEAVNVAYESTLAEGLRFERRYFHAT
FSTKDQKEGMLAFIEKRAPNFTSE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g3891.t4 | CDD | cd06558 | crotonase-like | 1 | 83 | 0 |
| 6 | g3891.t4 | Gene3D | G3DSA:3.90.226.10 | - | 1 | 86 | 0 |
| 5 | g3891.t4 | Gene3D | G3DSA:1.10.12.10 | - | 87 | 143 | 0 |
| 2 | g3891.t4 | PANTHER | PTHR11941:SF31 | ENOYL-COA HYDRATASE | 1 | 143 | 0 |
| 3 | g3891.t4 | PANTHER | PTHR11941 | ENOYL-COA HYDRATASE-RELATED | 1 | 143 | 0 |
| 1 | g3891.t4 | Pfam | PF00378 | Enoyl-CoA hydratase/isomerase | 1 | 143 | 0 |
| 4 | g3891.t4 | SUPERFAMILY | SSF52096 | ClpP/crotonase | 1 | 143 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed