General information for g3891.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable enoyl-CoA hydratase, mitochondrial.
Parent gene
- The parent gene g3891 is located on chr_3: 28634935..28635794 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3891 | g3891.t9 | TTS | g3891.t9 | 28634277 | 28634277 |
| chr_3 | g3891 | g3891.t9 | isoform | g3891.t9 | 28634381 | 28635396 |
| chr_3 | g3891 | g3891.t9 | exon | g3891.t9.exon1 | 28634381 | 28634474 |
| chr_3 | g3891 | g3891.t9 | cds | g3891.t9.CDS1 | 28634383 | 28634474 |
| chr_3 | g3891 | g3891.t9 | exon | g3891.t9.exon2 | 28634578 | 28634847 |
| chr_3 | g3891 | g3891.t9 | cds | g3891.t9.CDS2 | 28634578 | 28634847 |
| chr_3 | g3891 | g3891.t9 | exon | g3891.t9.exon3 | 28634912 | 28635229 |
| chr_3 | g3891 | g3891.t9 | cds | g3891.t9.CDS3 | 28634912 | 28635229 |
| chr_3 | g3891 | g3891.t9 | exon | g3891.t9.exon4 | 28635315 | 28635396 |
| chr_3 | g3891 | g3891.t9 | cds | g3891.t9.CDS4 | 28635315 | 28635396 |
| chr_3 | g3891 | g3891.t9 | TSS | g3891.t9 | 28635461 | 28635461 |
Sequences
>g3891.t9 Gene=g3891 Length=764
ATGGCTTCAATCACAAAGATCGTATCATCATTATCACGTGCACCTGCATTAAAGCAACAA
TACAGACTTTTCTGTGCGGCAGCAAACAAATATGAATTTATTGTAAAAGATGTTGCTGGC
GAGAAAAAGAATGTTGGTTTGATTACATTGAATCGACCAAAAGCTCTTAATGCTTTAAAT
AAAGGTTTAATGACAGAAGTTGCCAGAGCATTGAATGAATTTGATTCTGATAAATCTATT
GGTGCAATTGTCATAACTGGAAATGAGAAAGCTTTTGCTGCCGGTGCCGATATCAAAGAA
ATGCAGGGTAACACATATGCCGATTGCATTCTTAATAACTTTTTAGCTGATTGGACAAAA
GTTGCAAGCACAAAAAAACCAGTCATTGCAGCAGTTAATGGATATGCTCTTGGAGGCGGT
TGTGAATTAGCAATGATGTGCGATATAATTTATGCTGGAGATAAAGCTCGTTTCGGTCAA
CCTGAGATCAATATTGGAACAATTCCCGGAGCTGGCGGTACACAACGTTTAACACGCGTG
ATTGGAAAATCAAAGGCAATGGAAATGTGTTTGACAGGAAACATGATTACAGCTGAAGAA
GCTGAAAAGTCAGGTTTAGTAAGCAAAGTGTTTCCAGCTGATCAGTTAGTCAAAGAGGCA
GTTAAACTCGAAGATACTTCCACGCAACATTCTCAACCAAAGATCAGAAAGAAGGAATGT
TGGCATTTATTGAGAAACGTGCACCTAACTTTACCAGCGAATAA
>g3891.t9 Gene=g3891 Length=254
MASITKIVSSLSRAPALKQQYRLFCAAANKYEFIVKDVAGEKKNVGLITLNRPKALNALN
KGLMTEVARALNEFDSDKSIGAIVITGNEKAFAAGADIKEMQGNTYADCILNNFLADWTK
VASTKKPVIAAVNGYALGGGCELAMMCDIIYAGDKARFGQPEINIGTIPGAGGTQRLTRV
IGKSKAMEMCLTGNMITAEEAEKSGLVSKVFPADQLVKEAVKLEDTSTQHSQPKIRKKEC
WHLLRNVHLTLPAN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g3891.t9 | CDD | cd06558 | crotonase-like | 44 | 223 | 1.60173E-77 |
| 6 | g3891.t9 | Gene3D | G3DSA:3.90.226.10 | - | 29 | 228 | 9.3E-79 |
| 2 | g3891.t9 | PANTHER | PTHR11941:SF54 | ENOYL-COA HYDRATASE, MITOCHONDRIAL | 38 | 231 | 1.7E-77 |
| 3 | g3891.t9 | PANTHER | PTHR11941 | ENOYL-COA HYDRATASE-RELATED | 38 | 231 | 1.7E-77 |
| 1 | g3891.t9 | Pfam | PF00378 | Enoyl-CoA hydratase/isomerase | 41 | 227 | 3.6E-74 |
| 5 | g3891.t9 | ProSitePatterns | PS00166 | Enoyl-CoA hydratase/isomerase signature. | 129 | 149 | - |
| 4 | g3891.t9 | SUPERFAMILY | SSF52096 | ClpP/crotonase | 30 | 235 | 1.81E-69 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed